PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02383-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Dof
Protein Properties Length: 428aa    MW: 47219.6 Da    PI: 7.7381
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02383-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.29.8e-4076136262
                                                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 
                                                           ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrkn
  augustus_masked-scaffold02383-abinit-gene-0.6-mRNA-1  76 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKN 132
                                                           7899***************************************************** PP

                                                zf-Dof  59 kkss 62 
                                                           k+s+
  augustus_masked-scaffold02383-abinit-gene-0.6-mRNA-1 133 KNST 136
                                                           *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3158133IPR003851Zinc finger, Dof-type
PfamPF027012.2E-3278134IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.86380134IPR003851Zinc finger, Dof-type
PROSITE patternPS01361082118IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MFYLQDPTAE GSETREQDDD PPSNAEEPTD LERLPDGNVN PKTPSIEEEH GKSKIAKTEK  60
DQSETTNSQE KILKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKAC QRYWTAGGTM  120
RNVPVGAGRR KNKNSTSHYR HITISEALQA ARVDAPNGTH QPSYKSNGRV LSFGIDAPIC  180
DSMASVLNLA DNKVLNGTRN GLHSFEEQRI PVPGRRGENG DDSTSRSSIT VSNSMEEGGK  240
HFPREPFAQS INGFPHQIPC LPGVPWPYPW NSAVPPPAFC PPGFPMSFYP AAYWNCGVPG  300
TWSIPWLSPQ SSSNQKSPSS NPNSPTLGKH SREGDMLKPD NLEKEESPKQ KNGCVLVPKT  360
LRIDDPSEAA KSSIWTTLGI KNESISKGGM FKAFQSKGEE KNHISEHSPA LLANPAALSR  420
SLNFHESS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00394DAPTransfer from AT3G47500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886570.10.0cyclic dof factor 3
SwissprotQ8LFV31e-122CDF3_ARATH; Cyclic dof factor 3
TrEMBLA0A2N9H0580.0A0A2N9H058_FAGSY; Uncharacterized protein
STRINGXP_006477464.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.11e-102cycling DOF factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Corrales AR, et al.
    Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
    Plant Cell Environ., 2017. 40(5): p. 748-764
    [PMID:28044345]
  4. Renau-Morata B, et al.
    Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions.
    Front Plant Sci, 2017. 8: p. 660
    [PMID:28515731]
  5. Henriques R, et al.
    The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.
    New Phytol., 2017. 216(3): p. 854-867
    [PMID:28758689]