PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02209-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 718aa    MW: 80942.7 Da    PI: 5.2407
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02209-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3742e-1143497164374
                                                  GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel 60 
                                                           lL++cA+avss+d++ a++lL+++++++s+ gd +qRla+yf+eAL+arla+    +
  augustus_masked-scaffold02209-abinit-gene-0.0-mRNA-1 349 LLTQCAQAVSSSDQRTANELLKQIRQHCSQFGDGNQRLAHYFAEALEARLAG----T 401
                                                           79**************************************************....3 PP

                                                  GRAS  61 ykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDf 117
                                                             +++p  ++ ++ ++ l+a+k++  ++P+ ++s++ aN++ ++ ++++ r+HiiDf
  augustus_masked-scaffold02209-abinit-gene-0.0-mRNA-1 402 RVSMHPIVSNGTSAIDILKAYKVYITACPFKRMSNFFANRTTMKLAQKAPRLHIIDF 458
                                                           33455555555669******************************************* PP

                                                  GRAS 118 disqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                                                           +i +G+QWp+L+q L++Rp+g+p+lRiTg++ p+sg   +e++eetg+rL+++++++
  augustus_masked-scaffold02209-abinit-gene-0.0-mRNA-1 459 GILYGFQWPCLIQRLSERPGGAPKLRITGIELPQSGfrPTERVEETGRRLENYCKRF 515
                                                           ***********************************9********************* PP

                                                  GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229
                                                           +vpfe+nv +a+++e+++le+L+++++E ++Vn+ ++l++++de+v+++++rd+vLk
  augustus_masked-scaffold02209-abinit-gene-0.0-mRNA-1 516 NVPFEYNV-IAQKWETIKLEDLKIDRDELTVVNCLFRLKNIPDETVAMNNPRDTVLK 571
                                                           *******9.7*********************************************** PP

                                                  GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                                                           l+k+++P+++     +  +n++ F++rf eal+++s+lfd+++++lp e+ er  +E
  augustus_masked-scaffold02209-abinit-gene-0.0-mRNA-1 572 LIKKINPDLFMQGVVNGTYNAPFFVTRFREALYHFSSLFDMFDVNLPLEDPERLRYE 628
                                                           ********************************************************* PP

                                                  GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                                                           +e++g+e++nvvaceg er+er et+++W+ r  +aGF++vpl+++ ++++k  ++ 
  augustus_masked-scaffold02209-abinit-gene-0.0-mRNA-1 629 KEVVGKEAMNVVACEGLERIERPETYKQWQVRNLRAGFRQVPLDQELVQKVKKAVKS 685
                                                           ***************************************************999987 PP

                                                  GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                              + + v+ + ++l++gWk+r ++++S+W+
  augustus_masked-scaffold02209-abinit-gene-0.0-mRNA-1 686 EFHKDFVVDVDGQWLLQGWKGRIIYALSCWE 716
                                                           77677*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.978320696IPR005202Transcription factor GRAS
PfamPF035146.9E-112349716IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MDTLLEELQG PEFMNMNSFN HGSATLRSKQ DLANRFKVNH EFFQEPFLPT NPLQDPGDDS  60
SPSSTGTSLE GDPADSGEIP NTITLKYINE ILMEENLEAK PCMLQDCLAL QAAEKSFYEV  120
LGQKYPSSTD QLYPCFDQSI ESPDGYFDGS SSVDSGNSYT ITSADNLVES NWIYDQGESK  180
SFSMQSSAID SSGYAFLLPD SFSERQLVES HPHGNHEIID LESSPSVSPK QTTDAAENAD  240
MNRRHTSPNG SSRRKNHQRE DSDDLEEGRS NKHSVNYAGD SESLEMYDEV LLCPGGIRDS  300
KSCALRDSSG NGASKKLQQN GDSGGSNGKP TRSKKQGNKG GEIVDFWGLL TQCAQAVSSS  360
DQRTANELLK QIRQHCSQFG DGNQRLAHYF AEALEARLAG TRVSMHPIVS NGTSAIDILK  420
AYKVYITACP FKRMSNFFAN RTTMKLAQKA PRLHIIDFGI LYGFQWPCLI QRLSERPGGA  480
PKLRITGIEL PQSGFRPTER VEETGRRLEN YCKRFNVPFE YNVIAQKWET IKLEDLKIDR  540
DELTVVNCLF RLKNIPDETV AMNNPRDTVL KLIKKINPDL FMQGVVNGTY NAPFFVTRFR  600
EALYHFSSLF DMFDVNLPLE DPERLRYEKE VVGKEAMNVV ACEGLERIER PETYKQWQVR  660
NLRAGFRQVP LDQELVQKVK KAVKSEFHKD FVVDVDGQWL LQGWKGRIIY ALSCWEPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-463507158374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897035.10.0scarecrow-like protein 30
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2N9HNJ90.0A0A2N9HNJ9_FAGSY; Uncharacterized protein
STRINGcassava4.1_002718m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]