PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold02086-abinit-gene-0.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 284aa MW: 31274.7 Da PI: 7.6369

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold02086-abinit-gene-0.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	129.1	1.2e-40	25	86	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ augustus_masked-scaffold02086-abinit-gene-0.1-mRNA-1 25 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKR 83 7899******************************************************9 PP zf-Dof 61 sss 63 sss augustus_masked-scaffold02086-abinit-gene-0.1-mRNA-1 84 SSS 86 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.2E-34	27	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.646	29	83	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-23	29	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MPANSLENML ACSKAQPERK PRPQPEQALK CPRCDSTNTK FCYYNNYSLS QPRYFCKSCR 60 RYWTKGGTLR NVPVGGGCRK NKRSSSSSSK RTQDQPLTPN NNNPLTGFPP LTYDSTNDLS 120 LAFARLQKQS CGQLGFDDHD LPIMGNATSS HCDILGNPGP GFLDALRTGF LDSQNNNFHN 180 MYYGGYGNGN MGGEVDNGGG VGVSGEMVQM PYEDHQMSNA TTTAVTVTTM KQELCNGREN 240 DNRVLWGFPW QLNGDANMSE VDSGRESWNG LAPSWHGLLN SPLM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023884041.1	1e-166	dof zinc finger protein DOF2.1-like
TrEMBL	A0A0K8K635	1e-150	A0A0K8K635_CAJCA; Dof protein
TrEMBL	A0A151TN62	1e-150	A0A151TN62_CAJCA; Dof zinc finger protein DOF2.1 (Fragment)
STRING	GLYMA12G07710.1	1e-137	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-33	TARGET OF MONOPTEROS 6