PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold01939-abinit-gene-0.7-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

TCP

Protein Properties

Length: 387aa MW: 40804.4 Da PI: 6.9564

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold01939-abinit-gene-0.7-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.1	3.9e-35	83	188	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 a+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++a augustus_masked-scaffold01939-abinit-gene-0.7-mRNA-1 83 AARRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEHA 139 7899*************************************************** PP TCP 59 ikeltgtssssasec..eaesssssasnsssgkaaksaakskksqksaa 105 i+++tgt++ +a ++ + ++ +ss++aa+++a kk++++++ augustus_masked-scaffold01939-abinit-gene-0.7-mRNA-1 140 IIDATGTGTVPAIAVsvGGTLKIPTTTRDSSTAAATTTAAAKKRKRPSN 188 *****999995554322222222222222233333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-28	88	167	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.925	89	143	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MASYQEHEVD QDDDGVGGTS DLSSGSGPHQ ENNPNAYETP ALQGLPLKEE PFDSDPPSDP 60 DHPASSQPLG MVPMAMPIPV STAARRSSTK DRHTKVEGRG RRIRIPATCA ARIFQLTREL 120 GHKSDGETVR WLLEHAEHAI IDATGTGTVP AIAVSVGGTL KIPTTTRDSS TAAATTTAAA 180 KKRKRPSNSE FVDVENDGVV SNLSTLAPVQ PATPTVPPQG LVPVWAVGNT GMMVPANAFW 240 MIPQPGTAST SNPNPQIWTF SPPVTPVFNV STARPISSFT ANCSSQSQSQ SQNQNQNNNV 300 NVNMNIASGV EIRAPSPAVC NSTVSTSMVG AKVAKKSSST MAASVTSKAQ MLRDFSLEIY 360 DKQELQLMGR PGNHQTQASA ASSSSKP

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MASYQEHEVD QDDDGVGGTS DLSSGSGPHQ ENNPNAYETP ALQGLPLKEE PFDSDPPSDP  60
DHPASSQPLG MVPMAMPIPV STAARRSSTK DRHTKVEGRG RRIRIPATCA ARIFQLTREL  120
GHKSDGETVR WLLEHAEHAI IDATGTGTVP AIAVSVGGTL KIPTTTRDSS TAAATTTAAA  180
KKRKRPSNSE FVDVENDGVV SNLSTLAPVQ PATPTVPPQG LVPVWAVGNT GMMVPANAFW  240
MIPQPGTAST SNPNPQIWTF SPPVTPVFNV STARPISSFT ANCSSQSQSQ SQNQNQNNNV  300
NVNMNIASGV EIRAPSPAVC NSTVSTSMVG AKVAKKSSST MAASVTSKAQ MLRDFSLEIY  360
DKQELQLMGR PGNHQTQASA ASSSSKP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00635	PBM	Transfer from PK14653.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023891818.1	0.0	transcription factor TCP9-like
Refseq	XP_023891819.1	0.0	transcription factor TCP9-like
TrEMBL	A0A2N9FR83	1e-168	A0A2N9FR83_FAGSY; Uncharacterized protein
STRING	POPTR_0001s08590.1	1e-142	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	4e-50	TCP family protein