PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01919-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 544aa    MW: 60634.6 Da    PI: 5.0957
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01919-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.51.5e-1351745441374
                                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 
                                                           l+e+L +cA+a++++d   +++l+++l++++s +g+p+qRl ay++e+L arla+s+
  augustus_masked-scaffold01919-abinit-gene-0.2-mRNA-1 174 LKEVLCACAKAIEENDRFTTEWLMSHLQQMVSVNGEPIQRLGAYMLEGLVARLASSG 230
                                                           5789***************************************************** PP

                                                  GRAS  58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
                                                           s++ykal+++e +   s+e l+++++++ev+P++kf+++ aN aI ea+  e++vHi
  augustus_masked-scaffold01919-abinit-gene-0.2-mRNA-1 231 SSIYKALRCKEPA---SAELLSYMHVLYEVCPYFKFGYMSANGAIAEAMRDENEVHI 284
                                                           ************9...9**************************************** PP

                                                  GRAS 115 iDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                                                           iDf i qG QW++L+q La+Rp+gpp++RiTg+++++s   +   l  +g+rL+k+A
  augustus_masked-scaffold01919-abinit-gene-0.2-mRNA-1 285 IDFMIAQGSQWITLIQGLAARPGGPPKIRITGIDDSTSAyaRGGGLDIVGNRLSKLA 341
                                                           ***********************************998899999************* PP

                                                  GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
                                                           e+++vpfefn+ +    ++++le+L v+pgEa+aVn++l lh+++desv ++++rd+
  augustus_masked-scaffold01919-abinit-gene-0.2-mRNA-1 342 ESCKVPFEFNA-ARVPAAEVQLEDLGVRPGEAIAVNFALVLHHMPDESVGSQNHRDR 397
                                                           ***********.899****************************************** PP

                                                  GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                                                           +L+lvkslsPk+v++veqe+++n+++F++rfle+l+yy+a+f+s++++lpr+++eri
  augustus_masked-scaffold01919-abinit-gene-0.2-mRNA-1 398 LLRLVKSLSPKLVTLVEQESNTNTAPFFHRFLETLKYYTAIFESIDVTLPRDHKERI 454
                                                           ********************************************************* PP

                                                  GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                                                           +vE+++l+r+ivn++aceg er+erhe l+kWr+r+++aGF+p+pls+ +++++k+l
  augustus_masked-scaffold01919-abinit-gene-0.2-mRNA-1 455 NVEQFCLARDIVNIIACEGPERVERHELLGKWRSRFTMAGFTPYPLSSLVNATIKTL 511
                                                           ********************************************************* PP

                                                  GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           l+ ++++ y++ee++g+++lgW dr Lv+ +aW+
  augustus_masked-scaffold01919-abinit-gene-0.2-mRNA-1 512 LKSYSEK-YTLEERDGAFFLGWLDRVLVTSCAWQ 544
                                                           *****65.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.337148525IPR005202Transcription factor GRAS
PfamPF035145.1E-133174544IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MHPSQKQKFS NGLQRFSDEP VQEVVSDCMP TIQSLEPHSC SDDSSQGTHP SVPIFEQYCT  60
LESHSGTSGY AIHNSPSTVS FSPNGSSEQD TESFPVYSHQ SSDNTCGSPV NESCLTDDVD  120
DLRHKIRELE TAMLGPHSDT PDICSITNPV GPVQIPYDAE KCKQMMEMIS RWDLKEVLCA  180
CAKAIEENDR FTTEWLMSHL QQMVSVNGEP IQRLGAYMLE GLVARLASSG SSIYKALRCK  240
EPASAELLSY MHVLYEVCPY FKFGYMSANG AIAEAMRDEN EVHIIDFMIA QGSQWITLIQ  300
GLAARPGGPP KIRITGIDDS TSAYARGGGL DIVGNRLSKL AESCKVPFEF NAARVPAAEV  360
QLEDLGVRPG EAIAVNFALV LHHMPDESVG SQNHRDRLLR LVKSLSPKLV TLVEQESNTN  420
TAPFFHRFLE TLKYYTAIFE SIDVTLPRDH KERINVEQFC LARDIVNIIA CEGPERVERH  480
ELLGKWRSRF TMAGFTPYPL SSLVNATIKT LLKSYSEKYT LEERDGAFFL GWLDRVLVTS  540
CAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-621785448375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894127.10.0scarecrow-like protein 21 isoform X1
RefseqXP_023894132.10.0scarecrow-like protein 21 isoform X1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2I4E0170.0A0A2I4E017_JUGRE; scarecrow-like protein 21
STRINGVIT_12s0057g00560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]