PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01775-abinit-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 347aa    MW: 38778.2 Da    PI: 7.1533
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01775-abinit-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.16.3e-13270294226
                                                           -S---SGGGGTS--TTTTT-SS-SS CS
                                               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                                           ktelC+ +++tG C+yG  C+FaHg
  augustus_masked-scaffold01775-abinit-gene-0.7-mRNA-1 270 KTELCNKWQETGACPYGHHCQFAHG 294
                                                           9***********************8 PP
2zf-CCCH21.93.1e-07307331125
                                                           --S---SGGGGTS--TTTTT-SS-S CS
                                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                                                           yktelCr  +++ tC+yG rC+F H
  augustus_masked-scaffold01775-abinit-gene-0.7-mRNA-1 307 YKTELCRMVLAGDTCPYGHRCHFRH 331
                                                           9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-17263301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-10265300IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-6268295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624268296IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10270294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-12302333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8302336IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-5306333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197306334IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4307331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MENDASPPST TSTTTATSTP PREETVKTTL HLENQNFGTD FASLYHSIFP PKSPLPTTTS  60
TTSISLMSSP STCSSSIDDA VLSTQNRLNQ ARLILQYQEL NDHYDLCRAR LIDLLSEAES  120
LRHENAELRL ANAELLKLLS SQASFHNLLL SSSYPNRSFL QDLRRLSTED EEHSDNRTNL  180
FDNRFSLPKS ISVRSTGFTK ANLPPPPPPP FANTGPTPSR SSTRSRAPPS QLGSASQQQQ  240
QQQRVYVAGG KGEEDKEALE LEVYNQGMMK TELCNKWQET GACPYGHHCQ FAHGITELRP  300
VIRHPRYKTE LCRMVLAGDT CPYGHRCHFR HTLTDQERSS LLAPPPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-19269331466Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023890256.10.0zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_023890257.10.0zinc finger CCCH domain-containing protein 14 isoform X1
TrEMBLA0A2N9E3T21e-146A0A2N9E3T2_FAGSY; Uncharacterized protein
STRINGXP_010062213.11e-102(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-66C3H family protein