PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold01668-abinit-gene-0.6-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | LBD | ||||||||
Protein Properties | Length: 147aa MW: 16301.1 Da PI: 5.1915 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.5 | 2.9e-35 | 2 | 87 | 14 | 99 |
DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardP 72 +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dP augustus_masked-scaffold01668-abinit-gene-0.6-mRNA-1 2 PDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVAPHQREDAVNSLAYEAEARIKDP 60 79********************************************************* PP DUF260 73 vyGavgvilklqqqleqlkaelallke 99 vyG+vg i+ lq+q+ +l++el+++++ augustus_masked-scaffold01668-abinit-gene-0.6-mRNA-1 61 VYGCVGAISVLQRQVIRLQKELDATNA 87 **********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.035 | 1 | 89 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-34 | 2 | 86 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MPDCIFAPYF PPEEPQKFAN VHKIFGASNV SKLLNEVAPH QREDAVNSLA YEAEARIKDP 60 VYGCVGAISV LQRQVIRLQK ELDATNADLI RYACNANEMP TSSQFGRRNM SHGGGSFGQN 120 SGMYYHYSPW NNEPGEDSNE RGGDGNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-56 | 1 | 94 | 23 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-56 | 1 | 94 | 23 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023888698.1 | 1e-108 | LOB domain-containing protein 25-like | ||||
Refseq | XP_023888699.1 | 1e-108 | LOB domain-containing protein 25-like | ||||
Swissprot | Q8L8Q3 | 3e-57 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A2N9FIQ7 | 2e-93 | A0A2N9FIQ7_FAGSY; Uncharacterized protein | ||||
STRING | EMJ18120 | 3e-78 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1091 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-59 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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