PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold01654-abinit-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 293aa MW: 32214.4 Da PI: 8.6438 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.8 | 1.1e-32 | 64 | 119 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v YkeClkNhAa++Gg a+DGCgEf+ps++++ +++++lkCaACgCHRnFHRr+++ augustus_masked-scaffold01654-abinit-gene-0.5-mRNA-1 64 VSYKECLKNHAATMGGLALDGCGEFLPSPNATpSDPTSLKCAACGCHRNFHRRDTD 119 79*****************************99********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-21 | 64 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.5E-27 | 64 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.6E-29 | 66 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.012 | 66 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 180 | 252 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.93E-18 | 180 | 251 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.3E-26 | 190 | 246 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDFNPTTPTS PTPDTDAETP PQTQPFKSLS FTNGSLKRHH PLPLPPPTQP QPKPKPQQEP 60 PMLVSYKECL KNHAATMGGL ALDGCGEFLP SPNATPSDPT SLKCAACGCH RNFHRRDTDT 120 VPKVFNFHQQ LKLSSPSSSP STSPSPVRSP PPVSHLPPSQ YYYSSASSLP QMLLSLSAAA 180 EPSSENPLGK KRFRSKFTQE QKEKMFEFSE KLGWTMQKCN DGLVEEFCHE VGIDRKVLRV 240 WMHNNKSTLR KKEMGLLGHH STVSDGTAAF CCKKEIDYSV NVHVSANGSS PSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-22 | 191 | 248 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023920072.1 | 1e-158 | zinc-finger homeodomain protein 11-like | ||||
TrEMBL | A0A2I4FK33 | 1e-103 | A0A2I4FK33_JUGRE; zinc-finger homeodomain protein 11-like | ||||
STRING | XP_010257380.1 | 6e-73 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 3e-50 | homeobox protein 30 |