PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01539-abinit-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 154aa    MW: 17424.1 Da    PI: 7.7574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01539-abinit-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-191768256
                                                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                                           +y+GVr+++ +g+++AeIrdps  g  +r +lg+f+tae+Aa+a+++a+ +l+g+
  augustus_masked-scaffold01539-abinit-gene-0.12-mRNA-1 17 RYRGVRRRP-WGKFAAEIRDPSRHG--ARQWLGTFDTAEDAARAYDRAAFNLRGH 68
                                                           6********.**********96544..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-311777IPR001471AP2/ERF domain
SMARTSM003806.7E-371781IPR001471AP2/ERF domain
CDDcd000182.60E-181776No hitNo description
PfamPF008471.1E-131768IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-231776IPR016177DNA-binding domain
PROSITE profilePS5103224.6191775IPR001471AP2/ERF domain
PRINTSPR003677.5E-111829IPR001471AP2/ERF domain
PRINTSPR003677.5E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEESQKGKED KAKEEVRYRG VRRRPWGKFA AEIRDPSRHG ARQWLGTFDT AEDAARAYDR  60
AAFNLRGHLA VLNFPNEYYS QVMGSPPYPP HLSSFSSGSS TTSSAAPSTG NFERGGGSSS  120
SRQEKQVFEF EYLDDKVLED LLEPEEEKKK RNRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-321413711114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883912.14e-77ethylene-responsive transcription factor ERF098-like isoform X2
SwissprotQ9LTC51e-48ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A371E6D25e-66A0A371E6D2_MUCPR; Ethylene-responsive transcription factor ERF098 (Fragment)
STRINGGLYMA20G34560.15e-63(Glycine max)
STRINGXP_010093427.11e-62(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]