PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold01335-abinit-gene-0.14-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 25276.1 Da PI: 7.9288 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.3 | 1.8e-22 | 26 | 71 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ ++qvtfskRr+g++KKA+EL+vLC+aevav +fs++ ++y + augustus_masked-scaffold01335-abinit-gene-0.14-mRNA-1 26 DDRGKQQVTFSKRRTGLFKKASELCVLCGAEVAVFVFSQKKNMYSF 71 677789**************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.048 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-27 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.52E-30 | 16 | 84 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-25 | 16 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-18 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.4E-22 | 27 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-18 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-18 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MVLEKRVMTK GKKSIGRQRI EIKELDDRGK QQVTFSKRRT GLFKKASELC VLCGAEVAVF 60 VFSQKKNMYS FGHPNVETIL ERYLAGKTMS DSSSSSQELV PVDEFNRQYD QLQKELEKEK 120 MHLAEIEEMN KKMKNTNVGF WWDEPFDENM GLEEMEQYMK ALQEVRRKVG ARIEEFRMPR 180 TSLMQPMNMP MGLGNDFVNV NSWESNACGG FLCWNNI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023871107.1 | 1e-147 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2N9GYY5 | 7e-81 | A0A2N9GYY5_FAGSY; Uncharacterized protein | ||||
STRING | XP_002532452.1 | 1e-50 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-39 | AGAMOUS-like 61 |