PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01213-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CO-like
Protein Properties Length: 433aa    MW: 49006.9 Da    PI: 4.9165
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01213-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.4e-071659340
                                              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                                          +r C+ +   ++++fC  ++ +lC+ C  + H+       H++v
  augustus_masked-scaffold01213-abinit-gene-0.0-mRNA-1 16 ARACDSCLCRRARWFCAADDAFLCQACDASVHSAnqlarrHERV 59
                                                          578*****999*********************657788888876 PP
2CCT68.12.3e-23376419144
                                                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                                           Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  augustus_masked-scaffold01213-abinit-gene-0.0-mRNA-1 376 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 419
                                                           9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.7E-91461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9071461IPR000315B-box-type zinc finger
PfamPF006431.1E-61659IPR000315B-box-type zinc finger
CDDcd000212.75E-91761No hitNo description
PROSITE profilePS5101716.083376418IPR010402CCT domain
PfamPF062035.8E-18376418IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MITEKKVANA LGGKTARACD SCLCRRARWF CAADDAFLCQ ACDASVHSAN QLARRHERVR  60
LQTSSFKPNN DSPPAWHQGF TRKARTPRQN KSSLVQQAKE EEKFLNLLPF VPEIGSEEAS  120
QDDSNEEQLL YRVPIFDPFA SELCNEMGRT SVDERSDESI LGKNNEVEKV GADDYGRHGA  180
CDLDDLHGLL PSDMDLAEFA ADVESLLGKG LDEESCDIKG LGLLDCKEEN DIDLCTDIGE  240
GRVKVEEEEE EIEAIVECQL NPPVDMMSET LDWNFDYESP VAGEEVKLIS MAETKMMNGK  300
ECKEEKREMF LRLNHEAVIT AWDSRGSPWT TGTRPDFNPD DCWRDFMGLY NGDLRHQYGG  360
GDTGIGGHVG GRDEGREARV SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRTS  420
FMGASSAFPY IKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386402RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926094.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2N9GYU10.0A0A2N9GYU1_FAGSY; Uncharacterized protein
STRINGEOY210201e-168(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-93B-box type zinc finger protein with CCT domain