PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01180-abinit-gene-0.10-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24791.3 Da    PI: 8.6506
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01180-abinit-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92.1e-212063649
                                                           HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                                                 SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                                             +rqvtfskRr+g++KKA ELSvL +ae+avi++s+++k+y +
  augustus_masked-scaffold01180-abinit-gene-0.10-mRNA-1 20 GNQRQVTFSKRRAGLFKKAGELSVLSGAEIAVIVISKKDKVYCF 63
                                                           568**************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-25866IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.264867IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-22980IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-11929IPR002100Transcription factor, MADS-box
PfamPF003198.9E-202063IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-112944IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-114465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVMPKKTQGR QKVEMKELNG NQRQVTFSKR RAGLFKKAGE LSVLSGAEIA VIVISKKDKV  60
YCFGHPDVET ILNRYLTGGD ATLAESSQKH VAVNEFNVQY DEAQRELAIE KNRLKEIEED  120
VKMKKMTGSG GFWWDKPLDE NMGLEEMQHY LWSLQEARKK VAAKLDERMS MRMGKSSLMS  180
SMDMKVDVGN NNFVNPNLNG GNNNGGVFDS HGCGFELGQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896837.11e-145agamous-like MADS-box protein AGL61
TrEMBLA0A2N9J4P11e-99A0A2N9J4P1_FAGSY; Uncharacterized protein
STRINGEMJ209772e-49(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-34AGAMOUS-like 61