PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold01180-abinit-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 220aa MW: 24791.3 Da PI: 8.6506 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.9 | 2.1e-21 | 20 | 63 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +rqvtfskRr+g++KKA ELSvL +ae+avi++s+++k+y + augustus_masked-scaffold01180-abinit-gene-0.10-mRNA-1 20 GNQRQVTFSKRRAGLFKKAGELSVLSGAEIAVIVISKKDKVYCF 63 568**************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.8E-25 | 8 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.264 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-22 | 9 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-11 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.9E-20 | 20 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-11 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-11 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MVMPKKTQGR QKVEMKELNG NQRQVTFSKR RAGLFKKAGE LSVLSGAEIA VIVISKKDKV 60 YCFGHPDVET ILNRYLTGGD ATLAESSQKH VAVNEFNVQY DEAQRELAIE KNRLKEIEED 120 VKMKKMTGSG GFWWDKPLDE NMGLEEMQHY LWSLQEARKK VAAKLDERMS MRMGKSSLMS 180 SMDMKVDVGN NNFVNPNLNG GNNNGGVFDS HGCGFELGQY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023896837.1 | 1e-145 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2N9J4P1 | 1e-99 | A0A2N9J4P1_FAGSY; Uncharacterized protein | ||||
STRING | EMJ20977 | 2e-49 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 6e-34 | AGAMOUS-like 61 |