PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | augustus_masked-scaffold00986-abinit-gene-0.15-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 356aa MW: 39348.8 Da PI: 8.3515 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.8 | 5.9e-32 | 48 | 177 | 2 | 129 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakp 57 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak+ augustus_masked-scaffold00986-abinit-gene-0.15-mRNA-1 48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKH 103 689***************************************************** PP TCP 58 aikeltgtssssasec.eaesssssasnsssgkaaksaa.kskksqksaasalnla 111 +i el+ ++ ++ +++ ++++ ++ +s+ ++g +++s+ + +s s+++ ++ + augustus_masked-scaffold00986-abinit-gene-0.15-mRNA-1 104 EINELPPLPIPPGNFSlDPSNIEVGVSHCNEGFKMNSNFeWEGSSALSKSNLWSSD 159 ********999998887666666777766666444444422233333333334444 PP TCP 112 kesrakarararertrek 129 + rak+++ ar + ++ augustus_masked-scaffold00986-abinit-gene-0.15-mRNA-1 160 AFWRAKSKEAARGANPKQ 177 455566666665533333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.306 | 50 | 108 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 8.8E-29 | 50 | 167 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 356 aa Download sequence Send to blast |
MISRSKEADF SDNQEGNSID DKITKASSSS TPWLRLKDPR IVRVSRAFGG KDRHSKVCTI 60 RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEINELPP LPIPPGNFSL 120 DPSNIEVGVS HCNEGFKMNS NFEWEGSSAL SKSNLWSSDA FWRAKSKEAA RGANPKQNWT 180 KRNEVEGNES HGEQVSSNNF LPRASHPSLP AGLLNTTAIP YNYQWDPSNF PPTHFGSHGF 240 TSQTEDQPSY SVMSLPSTLS LSTGGPQILV CPPGTTQPFF PSHAMASGET DMRQVNHFQM 300 LSSSSHTHLP NSLTPPVYPT SQTIRSFNFN VTPPKPLHSP TSSGCQPNND QEFPSK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-18 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-18 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023893013.1 | 0.0 | transcription factor TCP13-like | ||||
TrEMBL | A0A2N9IJ14 | 0.0 | A0A2N9IJ14_FAGSY; Uncharacterized protein | ||||
STRING | EOY03699 | 1e-152 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02150.1 | 3e-39 | plastid transcription factor 1 |