PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00936-abinit-gene-0.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NF-YB

Protein Properties

Length: 149aa MW: 16846.8 Da PI: 6.2708

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00936-abinit-gene-0.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	158.1	1.4e-49	4	96	3	95
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrkt 61 eq+r+lPianv+rimk++lP akisk+ak+t+qec++efisfvt+easdkc++e+rkt augustus_masked-scaffold00936-abinit-gene-0.1-mRNA-1 4 EQERLLPIANVGRIMKQILPPTAKISKEAKQTMQECATEFISFVTAEASDKCHKENRKT 62 89******************************************************* PP NF-YB 62 ingddllwalatlGfedyveplkvylkkyreleg 95 +ngdd++wal+tlGf++y+e++ yl kyre+e+ augustus_masked-scaffold00936-abinit-gene-0.1-mRNA-1 63 VNGDDICWALSTLGFDNYAEAIVRYLYKYREAER 96 *****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.5E-50	3	116	IPR009072	Histone-fold
SuperFamily	SSF47113	7.3E-39	5	119	IPR009072	Histone-fold
Pfam	PF00808	1.1E-26	8	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.4E-18	36	54	No hit	No description
PRINTS	PR00615	4.4E-18	55	73	No hit	No description
PRINTS	PR00615	4.4E-18	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MDDEQERLLP IANVGRIMKQ ILPPTAKISK EAKQTMQECA TEFISFVTAE ASDKCHKENR 60 KTVNGDDICW ALSTLGFDNY AEAIVRYLYK YREAERLKAN QNKGNGTPDN HEEESNYGSG 120 GPHGRQTKLP IPLEFRVMER GDNSQARPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-40	4	93	3	92	Transcription factor HapC (Eurofung)
4g92_B	2e-40	4	93	3	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00133	DAP	Transfer from AT1G09030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023883351.1	1e-99	nuclear transcription factor Y subunit B-4-like
Refseq	XP_023883382.1	1e-99	nuclear transcription factor Y subunit B-4-like
Swissprot	O04027	4e-59	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A2N9G297	7e-87	A0A2N9G297_FAGSY; Uncharacterized protein
STRING	cassava4.1_026425m	8e-73	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	2e-61	nuclear factor Y, subunit B4

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]