PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00910-abinit-gene-0.9-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | LBD | ||||||||
Protein Properties | Length: 158aa MW: 18036.2 Da PI: 6.4917 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129 | 2.1e-40 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeereda 57 +CaaCk+lrr+C++dC+++pyfp ++p++f +vh+++Gasnv k+l++lp + r++a augustus_masked-scaffold00910-abinit-gene-0.9-mRNA-1 5 RCAACKYLRRRCPSDCIFSPYFPPNDPQRFSCVHRIYGASNVGKMLQQLPSHLRSQA 61 6******************************************************** PP DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++l++eA+ r++dPvyG+vg+i++l+qq++++++++a++++e augustus_masked-scaffold00910-abinit-gene-0.9-mRNA-1 62 ADTLYFEAQYRLQDPVYGCVGIISQLHQQINRAESQVAKIQAE 104 **************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.594 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.7E-40 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MISSRCAACK YLRRRCPSDC IFSPYFPPND PQRFSCVHRI YGASNVGKML QQLPSHLRSQ 60 AADTLYFEAQ YRLQDPVYGC VGIISQLHQQ INRAESQVAK IQAEISFLNS NAQEVEEPQV 120 DQHFEANSNF INNFLPEQIN TLDLSPYGLP STQTSWFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-36 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-36 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00381 | DAP | Transfer from AT3G26620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023896799.1 | 1e-107 | LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 3e-51 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2N9EMF1 | 5e-79 | A0A2N9EMF1_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0012s13910.1 | 7e-65 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-53 | LOB domain-containing protein 24 |