PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00870-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 300aa    MW: 32728.1 Da    PI: 8.2333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00870-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-204090256
                                                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                                          ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  augustus_masked-scaffold00870-abinit-gene-0.0-mRNA-1 40 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 90
                                                          589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-284098IPR001471AP2/ERF domain
PROSITE profilePS5103220.5344097IPR001471AP2/ERF domain
CDDcd000182.14E-314097No hitNo description
PfamPF008473.7E-154090IPR001471AP2/ERF domain
SMARTSM003804.4E-3540103IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-204197IPR016177DNA-binding domain
PRINTSPR003673.0E-74152IPR001471AP2/ERF domain
PRINTSPR003673.0E-76379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAGAETTKTT IATNITATNT TTTTTKANKM VQSSKQAVRR FVGVRQRPSG RWVAEIKDSS  60
QRVRLWLGTY DTPEEAARAY DEAARALRGE NARTNFASVN PINSSLTGSS PSNGGLPSQS  120
DGRHGLNFSS LKAKLSKNIQ NIMARTSDNK SSKSRVSDHF TFARVFHFRN YQYQSQMDIN  180
NIEKVVQPSI IVPHVETSTT TSTQPSSWEC SSVSDCSTEW VGFRQLGLDS DGSDIGEVSF  240
NEQGFVDQMI SGWIDSPEFM GVGGSSEEAE EGSRSKRFKV SSSVIVPPTF STGSLHNGEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1440961471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759534.11e-141ethylene-responsive transcription factor ESR2-like
TrEMBLA0A438HKX91e-137A0A438HKX9_VITVI; Ethylene-responsive transcription factor RAP2-11
TrEMBLA5BB591e-137A5BB59_VITVI; Uncharacterized protein
STRINGXP_002511793.11e-128(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18related to AP2 11