PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00852-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 212aa MW: 24231 Da PI: 5.8399 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.6 | 1.6e-19 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++ +G ++W+tIa + g++R++k+c++rw++yl augustus_masked-scaffold00852-abinit-gene-0.0-mRNA-1 30 KGAWTAEEDSKLAEVIAIHGAKRWTTIATKAGLNRCGKSCRLRWLNYL 77 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.3e-16 | 83 | 128 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l augustus_masked-scaffold00852-abinit-gene-0.0-mRNA-1 83 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 128 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.274 | 25 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-29 | 28 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-16 | 29 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-18 | 30 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 31 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.67E-11 | 32 | 77 | No hit | No description |
PROSITE profile | PS51294 | 20.703 | 82 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 83 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-25 | 85 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.70E-10 | 87 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MASMADRSIK REVNAMEAIN NVSTKKEVNK GAWTAEEDSK LAEVIAIHGA KRWTTIATKA 60 GLNRCGKSCR LRWLNYLRPN IKRGNISDQE EDLILRLHKL LGNRWSLIAG RLPGRTDNEI 120 KNYWNSHLSK KLRQKEKQSV AATRDGYTVQ ENREEDKVNE EMSGEENTSK GVDDSKSDFD 180 VDEFFDFSNE STLNLDWVSQ FLELDQGFSD VS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-30 | 27 | 132 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023909039.1 | 1e-137 | transcription factor WER-like isoform X1 | ||||
Swissprot | Q9SEI0 | 5e-53 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A2N9FU83 | 1e-126 | A0A2N9FU83_FAGSY; Uncharacterized protein | ||||
STRING | EOY27239 | 1e-103 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 4e-55 | myb domain protein 66 |