PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00767-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 1035aa    MW: 114590 Da    PI: 7.4907
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00767-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.2e-40148225178
                                                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--S CS
                                                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDe 57 
                                                           +Cqv++C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh+l+efDe
  augustus_masked-scaffold00767-abinit-gene-0.2-mRNA-1 148 VCQVQDCRADLSNAKDYHRRHKVCDVHSKASKALVGNIMQRFCQQCSRFHALQEFDE 204
                                                           6******************************************************** PP

                                                           S--S-STTTT-------S--- CS
                                                   SBP  58 ekrsCrrrLakhnerrrkkqa 78 
                                                           +krsCrrrLa+hn+rrrk+++
  augustus_masked-scaffold00767-abinit-gene-0.2-mRNA-1 205 GKRSCRRRLAGHNRRRRKTHP 225
                                                           ******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.5E-32142210IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.043146223IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-37147229IPR004333Transcription factor, SBP-box
PfamPF031108.9E-29149222IPR004333Transcription factor, SBP-box
SuperFamilySSF484039.02E-7803917IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.1E-6805917IPR020683Ankyrin repeat-containing domain
CDDcd002049.77E-7806916No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1035 aa     Download sequence    Send to blast
MEAQFGGKAN QFFGPVVPDL KAVGKKSLEW DLNDWKWDGD LFRACPLNSA PSDCRSRQLF  60
PVGTEIPENV VLSNSLSSGS DDVNPANGVG RRELEKRRRD VAVEDEELND EDGSLNLKLG  120
GQVYPIMEGE LKSGKKTKIV GNSSNRAVCQ VQDCRADLSN AKDYHRRHKV CDVHSKASKA  180
LVGNIMQRFC QQCSRFHALQ EFDEGKRSCR RRLAGHNRRR RKTHPDTVVN GGSLNAERGS  240
SYLLISLLRI LSNLHSNGSD QNKDQDLLSH LLKNLASLAG TVDGRNISAL LEGSQGLLNA  300
GTSNGAPQKV TDVTPNGSEP SRPFSSALKM DDCINLHDHP RPMGQCVTVS ASDVAQKRIY  360
SDDAGGRHVQ ALSGLQHMNP PPSKDGLPSK SISETTNGRI KFNSIDLNNL CDDSEGHVEN  420
TGKSQAPVNS GTGLLGHPLW VQHDSLKSSP PQTSGNSDST SSQSPSSSSG EAQVRTDRIV  480
FKLFGKDPND FPLALRTQIL DWLSHSPTDI ESYIRPGCII LTIYLRLEKS TWEELCCDLG  540
SYLRELLDAS NDSFWRTGWV YTRVRHSVAF MYNGQVVLDT PLPLKNQKSC RISSIKPIAV  600
SVSERVQFVV KGCNLFRSSA RLLCALEGKY LIQDTCNELM DSADTAIEHN ELQCLSFPCS  660
IPNVTGRGFI EVEDHGLSSS FFPFIVAEQE VCSEICMLEG AIEVVETADD IQRVPALLEA  720
KTQALDFIHE MGWLLHRSHV KFRLGHMDPN QDLFPFKRFK WLMEFSMDHD WCAVVKKLLG  780
ILFEGAVGTG EHPSVELALL DLGLLHRAVR RNCRPMVELL LRFIPDKVLD KTGSQGKQQD  840
YQGINGFLFK PDILGPAGLT PLHIAASKEG SENVLDALTD DPGLVGIKAW KSARDSTGLT  900
PNDYACLRGY YSYIHLVQKK ISNKSENSHV VLDIPGALLD CNTKWKQSDR HKLSKVASLQ  960
TEKVEMGGSC RHCKLCEQKP AYGNMRRSLV YKPAMLSMVT IAAVCVCVAL LFKSSPEVLY  1020
VFRPFRWELL KYGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-30143222584squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885620.10.0squamosa promoter-binding-like protein 1
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A2N9EIR70.0A0A2N9EIR7_FAGSY; Uncharacterized protein
STRINGEMJ265940.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]