PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 223aa MW: 24930.3 Da PI: 7.1504 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 29.6 | 2e-09 | 15 | 101 | 32 | 122 |
GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 ++erd +i+e ++al ek++a+aerd a ++rd+a+ae +k ++e ++l al ++e augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1 15 VQERDMAIQELKIALFEKEEALAERDRAIQERDAAIAE-HKLILESYDALNALYFRE 70 45666666777777777778888888888888888888.777788888999999988 PP GAGA_bind 89 nsla....salpvgvqvlsgtksidslqqlsepqleds 122 s++ + + g ++++g k+ + ql++ augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1 71 SSMNddksITVSLGNGISPGPKHG-------HDQLSEA 101 887744332333344444444443.......3444443 PP | |||||||
2 | GAGA_bind | 224.1 | 1.2e-68 | 110 | 223 | 187 | 301 |
GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243 k e++ ++ +ln+v++Dest+P+PvCsCtG +qCYkWGnGGWqSaCCt+++S+yP augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1 110 LKIEWE-TESGLNKVNFDESTMPAPVCSCTGEVQQCYKWGNGGWQSACCTIKMSMYP 165 556665.5779********************************************** PP GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 LP ++++r aR++grKmS+++f+klL +L ++G++ls pvDLk+hW kHGtn++ ti augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1 166 LPHVPNKRRARVGGRKMSGSVFSKLLCRLMDDGHNLSAPVDLKNHWGKHGTNRYSTI 222 ********************************************************* PP GAGA_bind 301 r 301 + augustus_masked-scaffold00745-abinit-gene-0.5-mRNA-1 223 K 223 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 3.5E-67 | 1 | 223 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 7.8E-66 | 109 | 223 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MQTYMTIVAE KDVAVQERDM AIQELKIALF EKEEALAERD RAIQERDAAI AEHKLILESY 60 DALNALYFRE SSMNDDKSIT VSLGNGISPG PKHGHDQLSE AALSTRNVPL KIEWETESGL 120 NKVNFDESTM PAPVCSCTGE VQQCYKWGNG GWQSACCTIK MSMYPLPHVP NKRRARVGGR 180 KMSGSVFSKL LCRLMDDGHN LSAPVDLKNH WGKHGTNRYS TIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023884391.1 | 1e-143 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_023884392.1 | 1e-143 | protein BASIC PENTACYSTEINE6-like | ||||
Swissprot | F4JUI3 | 5e-69 | BPC5_ARATH; Protein BASIC PENTACYSTEINE5 | ||||
TrEMBL | A0A151RQK4 | 4e-76 | A0A151RQK4_CAJCA; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P03770_001 | 7e-72 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6905 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38910.1 | 1e-71 | basic pentacysteine 5 |