PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00656-abinit-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 762aa    MW: 85644.6 Da    PI: 6.0679
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00656-abinit-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.31.5e-1173897591373
                                                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlars 56 
                                                            l++lL+ cA+avss+d + a+ +L+++++++sp gd  qRla+yf+  ++arla++
  augustus_masked-scaffold00656-abinit-gene-0.13-mRNA-1 389 LRTLLVLCAQAVSSDDRRTASGVLKQVRQHSSPFGDGSQRLAHYFADCIEARLAGT 444
                                                            5789**************************************************** PP

                                                   GRAS  57 vselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeerv 112
                                                            ++++y al+p++ts    +++l+a+++++ ++P++k++ + aN++Il+a e++ ++
  augustus_masked-scaffold00656-abinit-gene-0.13-mRNA-1 445 GTQIYTALAPKKTS---AADVLKAYQAYVSACPFMKLAIIFANHMILRASENAATL 497
                                                            *************9...9************************************** PP

                                                   GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                                            HiiDf+i +G+QWpaL+q L+ R++gpp+lRiTg++ p+ g   +e +++tg+rLa
  augustus_masked-scaffold00656-abinit-gene-0.13-mRNA-1 498 HIIDFGILYGFQWPALIQCLSRRQGGPPKLRITGIELPQRGfrPAEGVQQTGRRLA 553
                                                            ***************************************99*************** PP

                                                   GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222
                                                            k++e+++vpfe+n+ +a+++e++++++L+++++E+laVn+  + ++llde+v +++
  augustus_masked-scaffold00656-abinit-gene-0.13-mRNA-1 554 KYCERFNVPFEYNA-IAQKWETIQVKDLKINRDEVLAVNCLNRFKNLLDETVVVNN 608
                                                            **************.7**************************************** PP

                                                   GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                                                            +rd+vL+l+++++P+++v++  + ++n++ F++rf eal ++s+lfd+l+++ +re
  augustus_masked-scaffold00656-abinit-gene-0.13-mRNA-1 609 PRDAVLNLIRKINPNIFVHAIVNGSYNAPFFVTRFREALFHFSSLFDMLDTNTARE 664
                                                            ******************************************************** PP

                                                   GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                                            +  r + E+e++gre++nv+aceg er+er et+++W+ r ++aGF+++p++ +++
  augustus_masked-scaffold00656-abinit-gene-0.13-mRNA-1 665 DPMRLMFENEFFGREAMNVIACEGLERVERPETYKQWQLRKMRAGFRQLPMDREIM 720
                                                            ******************************************************** PP

                                                   GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                                            k+ ++ l+  + + + v+ + +++++gWk+r L++ S+W
  augustus_masked-scaffold00656-abinit-gene-0.13-mRNA-1 721 KKLRAKLKGGYHNDFVVDVDGHWMLQGWKGRILYASSCW 759
                                                            *********99888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.625363740IPR005202Transcription factor GRAS
PfamPF035145.1E-115389759IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MFMDPQQPQF FGSINGFKFD MESLFVNSDQ YPVVENGIIF NSPTLGPSFM GNPVFSPDPS  60
PGNSAQSSLE GDSPTDDSDF SDSVLKYISQ VLMEEEMESK PCMFHDPLAL QATEKSLYEV  120
IGGKNPTSPD QHPLYIDQNV ESPDDSFLSG FSDHSSNSSS SFGNSNLNDF QWNHADFGEY  180
KLSLLKNPLP TDFVFQSTAK SSPPSSFNFP NSLTSDGNGL LGSSVNELLV QNFLSNTESV  240
LQFQRGVEEA SKFLPKGNQL TVDLENNKFS PVLNKKAPEV LVKMEIDERE HSPSRLRGRK  300
NHEREDTDLE DGRSNKQSAV YPDESEISEM FDRVLLCGGA KREPSVCNFD ESLQNGENKN  360
VLQNGQSNVS SGAKTRAKKQ SNTKDVVDLR TLLVLCAQAV SSDDRRTASG VLKQVRQHSS  420
PFGDGSQRLA HYFADCIEAR LAGTGTQIYT ALAPKKTSAA DVLKAYQAYV SACPFMKLAI  480
IFANHMILRA SENAATLHII DFGILYGFQW PALIQCLSRR QGGPPKLRIT GIELPQRGFR  540
PAEGVQQTGR RLAKYCERFN VPFEYNAIAQ KWETIQVKDL KINRDEVLAV NCLNRFKNLL  600
DETVVVNNPR DAVLNLIRKI NPNIFVHAIV NGSYNAPFFV TRFREALFHF SSLFDMLDTN  660
TAREDPMRLM FENEFFGREA MNVIACEGLE RVERPETYKQ WQLRKMRAGF RQLPMDREIM  720
KKLRAKLKGG YHNDFVVDVD GHWMLQGWKG RILYASSCWI PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-503727611379Protein SCARECROW
5b3h_D2e-503727611379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904352.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2I4FWN90.0A0A2I4FWN9_JUGRE; scarecrow-like protein 33
STRINGcassava4.1_002197m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]