PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00629-abinit-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ZF-HD
Protein Properties Length: 322aa    MW: 35227.7 Da    PI: 8.3931
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00629-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.13.9e-3291148260
                                           ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                                           ++vrY+eCl+NhAas+Gg+++DGCgEfmps geeg+ +alkCaAC+CHRnFHR+ev+
  augustus_masked-scaffold00629-abinit-gene-0.5-mRNA-1  91 ATVRYRECLRNHAASTGGNVFDGCGEFMPS-GEEGSLEALKCAACDCHRNFHRKEVN 146
                                                           579**************************9.999*********************97 PP

                                           ZF-HD_dimer  59 ee 60 
                                                            e
  augustus_masked-scaffold00629-abinit-gene-0.5-mRNA-1 147 GE 148
                                                           65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2392146IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.2E-3093145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-2994145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.80395144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-30230295IPR009057Homeodomain-like
SuperFamilySSF466895.34E-20231295IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-28234291IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEMKAQEKEL GTPGSFSYGG HIIGGSLEVE RRRDGFHGGS GTTSRSRTQS LAPQQHHPSQ  60
ARVTVTVPDP VTSATIAPML GRSNSNPQPA ATVRYRECLR NHAASTGGNV FDGCGEFMPS  120
GEEGSLEALK CAACDCHRNF HRKEVNGETQ FSPGSRRSIV LSPLQIPPLS SPAGMLHHQK  180
FSMGFHTNPT APIVQPMNVA YGGGGGGTES SSEDLNVFHT NAEAMPQPPF TVSKKRFRTK  240
FTPEQKDKML EFAEKVGWRI QKQDEEEVVK FCAEIGVKRQ VLKVWMHNNK NSMKKPNETE  300
KQTFEMGTAK PVAMEGGIEA EM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-262352921875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883953.10.0zinc-finger homeodomain protein 5-like
SwissprotQ9FRL51e-69ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A2N9GME91e-172A0A2N9GME9_FAGSY; Uncharacterized protein
STRINGcassava4.1_022551m1e-110(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.12e-71homeobox protein 33