PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00568-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Nin-like
Protein Properties Length: 793aa    MW: 88481.2 Da    PI: 6.7491
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00568-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.61.2e-28490541152
                                                RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                                           aek+i le+l++yF++++kdA+k++gvc+T+LKriCRq+GI+RWP+Rkik++
  augustus_masked-scaffold00568-abinit-gene-0.2-mRNA-1 490 AEKTIPLEVLQQYFAGSLKDASKSIGVCPTTLKRICRQHGINRWPSRKIKKV 541
                                                           5899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.439480561IPR003035RWP-RK domain
PfamPF020423.4E-24494541IPR003035RWP-RK domain
SuperFamilySSF542771.03E-23686782No hitNo description
PROSITE profilePS5174526.029696779IPR000270PB1 domain
SMARTSM006664.1E-25696779IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2403.3E-22698776No hitNo description
PfamPF005642.4E-18698778IPR000270PB1 domain
CDDcd064073.11E-37698777No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MENGFSAPDE AQRPLPDESQ ERSLVNGQNT VDVVAGCSSE LENIVIKGPK LGRGLWIAPN  60
MNQGLTYCVE ERLMKAIEYI REFTRGKDVL IQVWVPVNRD GRRVLTTSNQ PFAFGSSNPS  120
LASYRDISAD FHFAAEEDSK EVVGLPSRVF LGKVPEWTPD VQFFTKNEYL RVVHAQLYDV  180
RGTLALPIFE HDSSNCVGVI EVVMTAQQTK YGPDFESVCK ALEAVDLMSF DALSIENLKA  240
CPKSYQAALP EIQEVLRFAC KTHRLPLAQT WVPCIQQGKV GCRHSNENYI YCVSTVDRAC  300
IVADPNMQEF HEACSEHHLL KGEGIVGEAF KTNQARFSSD ITSQSKTEYP LSHHARLFGL  360
HAAVAIHLRS IHTGTDDFVL EFFLPTDCRD PEEQKNMLNS LSCIIQQVCR SLRVVTDKEL  420
EEDTNLPVNG TGKLCREEIL KENSSEFCQP HLDSNLKLNV DCGEKCPMHG KGNFPSVGKA  480
KTGEKRRTKA EKTIPLEVLQ QYFAGSLKDA SKSIGVCPTT LKRICRQHGI NRWPSRKIKK  540
VGHSLKKLQL VMDSVEGASG ALQIDSFYTK FPKLASPNLS GTNPFSASKL SNQPQPILQP  600
EGGICSPETA ASKSPXXXXX XXXXCSQGSS SSHAPTRNVV GCEDPIVGEN FSDSALQRIT  660
SEAELHASIQ APKLQPKLES LKSFNEHPSA KNFPPLQKLK VTYGDEKIRL RMKNNWKYKD  720
LLLEIASRFN IHDISRFDVK YLDDDSEWVL LTCDDDLEEC IDICRSPQSD TIKLALQVSR  780
HHVRRSLGSN DTS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920408.10.0protein NLP5-like
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A2N9HEH40.0A0A2N9HEH4_FAGSY; Uncharacterized protein
STRINGXP_008237985.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein