PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00395-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CPP
Protein Properties Length: 837aa    MW: 91567 Da    PI: 5.0106
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00395-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR31.53.6e-105515801241
                                                   TCR  12 kClkkYCeCfaagkkCseeCkCedCkNkee 41 
                                                           +C+  YCeCfaag++C ++C C +C+Nk e
  augustus_masked-scaffold00395-abinit-gene-0.1-mRNA-1 551 ECMGSYCECFAAGVYCVDSCACVNCFNKPE 580
                                                           6**************************976 PP
2TCR51.32.3e-16628666139
                                                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                                           ++k+gCnCkkskClkkYCeC++a++ Cs+ C+Ce+C+N+
  augustus_masked-scaffold00395-abinit-gene-0.1-mRNA-1 628 RHKRGCNCKKSKCLKKYCECYQANVGCSDGCRCEGCQNS 666
                                                           589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.0E-6525581IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.879546668IPR005172CRC domain
PfamPF036383.2E-7551578IPR005172CRC domain
SMARTSM011141.8E-17628669IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11630666IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MNSPESNRVA ATSSPSSSNK SPPVQESPFS NFLSNLSPIK SVKAVRYTQR FLESNFPTPP  60
PVFTSPRIDL QRETGLLERN NIVEEDSNIR EQCNTQLNVA QIPSLDKEVQ SCSPSGSVDE  120
YLADIVEVDC THSAHKQLQL ANEVPQMLEG GFTDPKETIR KVDTVDNRSS REARSLTSSN  180
QAEQNLPLTS LNLVDDLVDL RNDESFNVFL KITSEDVNDS VDPEVNLNPA LGVQQYEQHA  240
AQNVAQHDKG HGTCQSLPEP LQIDEAFEDS DDSSRALPKE FVKEANHYQR GIRRHLHFEA  300
ALACKGVATG NTTNSRASLT NLKSLGLSHV ESRATSSGGE AVNYAQSRAS KSSFSPFKVV  360
RSTQNSRNPV ILSPIPSGMG LHLNSTVRSV SLGMDMFASK NLTRYRSSQD KVVHERSNDS  420
AEDPNSTSIS AVTGTMYSYA DIDQQESQAG VAASSDTYPI NSLNPPCDSP LARTEQQVIP  480
CEGRISTPQN ADSVEELNEE SSNKKRQACT YCLIYALFLY SFCQLEFLGC VQEEAIKHNS  540
TQPSFGLLSI ECMGSYCECF AAGVYCVDSC ACVNCFNKPE YEDTVLDTRQ QIESRNPLAF  600
APKVVKHDTD SPAIIMEAGN RNTPSSARHK RGCNCKKSKC LKKYCECYQA NVGCSDGCRC  660
EGCQNSFGTS SECRRVENPS HEVSGKDGSI EQFSPTWKGL ADIRNLAPCS GALMFASSNI  720
RDCSKVSQTK LQRGSSIQPQ AGSLQWNYSP VILTPQLCDS KGSHELTSDS APCDIMEDED  780
MPEILKDTST PLKALDTAFM LVRNQARIIA MGVLILGLYT ISDAVVHCPF GVLCGGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1255266521120Protein lin-54 homolog
5fd3_B1e-1255266521120Protein lin-54 homolog
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881871.10.0CRC domain-containing protein TSO1-like isoform X1
TrEMBLA0A2N9HR440.0A0A2N9HR44_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142771417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.17e-51Tesmin/TSO1-like CXC domain-containing protein