PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00375-abinit-gene-1.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

M-type_MADS

Protein Properties

Length: 68aa MW: 7995.22 Da PI: 10.707

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00375-abinit-gene-1.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	104.2	4.5e-33	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss augustus_masked-scaffold00375-abinit-gene-1.0-mRNA-1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.782	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.7E-41	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.73E-38	2	61	No hit	No description
SuperFamily	SSF55455	3.66E-31	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-34	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-34	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-34	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFSST 60 SRYYHQNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-21	1	61	1	61	MEF2C
5f28_B	2e-21	1	61	1	61	MEF2C
5f28_C	2e-21	1	61	1	61	MEF2C
5f28_D	2e-21	1	61	1	61	MEF2C
6byy_A	2e-21	1	61	1	61	MEF2 CHIMERA
6byy_B	2e-21	1	61	1	61	MEF2 CHIMERA
6byy_C	2e-21	1	61	1	61	MEF2 CHIMERA
6byy_D	2e-21	1	61	1	61	MEF2 CHIMERA
6bz1_A	2e-21	1	61	1	61	MEF2 CHIMERA
6bz1_B	2e-21	1	61	1	61	MEF2 CHIMERA
6bz1_C	2e-21	1	61	1	61	MEF2 CHIMERA
6bz1_D	2e-21	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269\|PubMed:28528644}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	2e-65	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022850778.1	5e-37	MADS-box protein EJ2-like
Swissprot	Q39685	1e-35	CMB1_DIACA; MADS-box protein CMB1
Swissprot	Q7Y040	1e-35	EJ2_SOLLC; MADS-box protein EJ2
TrEMBL	A0A151SPN8	3e-37	A0A151SPN8_CAJCA; Agamous-like MADS-box protein AGL9 isogeny
STRING	POPTR_0003s16800.1	2e-36	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	1e-37	MIKC_MADS family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]