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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
augustus_masked-scaffold00362-abinit-gene-0.10-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 337aa MW: 37547.3 Da PI: 9.6711 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| augustus_masked-scaffold00362-abinit-gene-0.10-mRNA-1 | genome | THGP | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 388.3 | 1.2e-118 | 1 | 337 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsek 49
mdd g+re r+k+ +y+ a + l +++ +q+m ++aerda+i+ernla++ek
augustus_masked-scaffold00362-abinit-gene-0.10-mRNA-1 1 MDDGGHREngRHKAdQYKTAqsQWLMQHQpsMKQIMGIMAERDAAIQERNLAVAEK 56
9*****999*****9**95443334444321469********************** PP
GAGA_bind 50 kaavaerdmaflqrdkalaernkalverdnkllalllvensla...salpvgvqvl 102
kaa+aerdmafl+rd+a+aern+a++erdn++++l+++ens + +++p+g+q++
augustus_masked-scaffold00362-abinit-gene-0.10-mRNA-1 57 KAAIAERDMAFLERDTAIAERNNAMLERDNAIATLQYRENSFTsgnMSCPPGCQIS 112
****************************************98888899******** PP
GAGA_bind 103 sgtksidslqqlse....pqledsavelreeekleal...pieeaaeeakekkkkk 151
+g+k+i++ q +++ p+++++++++re+++++ l p+ +++ ++k++k++k
augustus_masked-scaffold00362-abinit-gene-0.10-mRNA-1 113 RGVKHIHHPQAQQHmhhvPHMGEPSYNTREMNTSDGLamsPVASETAKSKRAKRTK 168
********9986666789************99987551115555555555555555 PP
GAGA_bind 152 krq..rakkpkekkakkkkkksekskkkvkkesader.................sk 188
+++ ++ k+ +k+ +k k++s++ ++ k+++ ++ k
augustus_masked-scaffold00362-abinit-gene-0.10-mRNA-1 169 ENKglSSDKKAAKTPRKIKRESDDLNNMFGKPNEWKSeqdmgsggddlnrqtgvPK 224
4441133333344555777777777777777665433689*************99* PP
GAGA_bind 189 aekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244
+++k +dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPL
augustus_masked-scaffold00362-abinit-gene-0.10-mRNA-1 225 TDWKGQDLGLNQVAFDESTMPAPVCSCTGILRQCYKWGNGGWQSSCCTTTLSMYPL 280
******************************************************** PP
GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
P+++++r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn+++ti
augustus_masked-scaffold00362-abinit-gene-0.10-mRNA-1 281 PAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITI 336
******************************************************** PP
GAGA_bind 301 r 301
+
augustus_masked-scaffold00362-abinit-gene-0.10-mRNA-1 337 K 337
8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MDDGGHRENG RHKADQYKTA QSQWLMQHQP SMKQIMGIMA ERDAAIQERN LAVAEKKAAI 60
AERDMAFLER DTAIAERNNA MLERDNAIAT LQYRENSFTS GNMSCPPGCQ ISRGVKHIHH 120
PQAQQHMHHV PHMGEPSYNT REMNTSDGLA MSPVASETAK SKRAKRTKEN KGLSSDKKAA 180
KTPRKIKRES DDLNNMFGKP NEWKSEQDMG SGGDDLNRQT GVPKTDWKGQ DLGLNQVAFD 240
ESTMPAPVCS CTGILRQCYK WGNGGWQSSC CTTTLSMYPL PAVPNKRHAR VGGRKMSGSA 300
FNKLLSRLAA EGHDLSNPVD LKDNWAKHGT NRYITIK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
