PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00344-abinit-gene-0.7-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10488.6 Da PI: 6.5344 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.8 | 3.2e-10 | 14 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+e +++ +a +++ ++ +W +a+ +g ++t +++k ++ augustus_masked-scaffold00344-abinit-gene-0.7-mRNA-1 14 SWTPEQNKRFEKALALYDKDtpdRWQNVAKAVGANKTTEEVKRHY 58 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 7 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.067 | 10 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-8 | 11 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.81E-13 | 13 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-8 | 14 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MASSSLSKQN SSSSWTPEQN KRFEKALALY DKDTPDRWQN VAKAVGANKT TEEVKRHYEI 60 LLEDLRHIES GLVPIPKYRP NGSSANIDEE ER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-30 | 7 | 90 | 3 | 85 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023927209.1 | 3e-50 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 1e-30 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2N9EXV7 | 2e-49 | A0A2N9EXV7_FAGSY; Uncharacterized protein | ||||
STRING | GLYMA11G12460.1 | 2e-45 | (Glycine max) | ||||
STRING | GLYMA12G04680.2 | 3e-45 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-32 | RAD-like 1 |