PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00283-abinit-gene-1.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 318aa MW: 35128.4 Da PI: 8.5569

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00283-abinit-gene-1.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.7	2.6e-38	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++ +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+ augustus_masked-scaffold00283-abinit-gene-1.3-mRNA-1 37 PQQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKR 95 78999***************************************************998 PP zf-Dof 61 ss 62 ++ augustus_masked-scaffold00283-abinit-gene-1.3-mRNA-1 96 AK 97 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.7E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	41	95	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-24	42	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MQQEIRDGEG SEDMKPQSQD QRLTPMQLEN QQQQQQPQQP QKCPRCESLN TKFCYYNNYS 60 LSQPRYFCKT CRRYWTQGGT LRNVPVGGGC RKGKRAKTSS SSSSSENSRS QQPQQAVQQQ 120 NLTNPPAVIP SNPAITTSPA LRTKEHGILA SPSAPSIPSI SPYYAAGGYL SSLAAIQSLN 180 QSQTYSQALG IGDDLGGSSN LSLLQGFSVP SFGSQQHQRQ IQQNQFYQMG NRDRNMEHLY 240 PTEETLIQSN RPPTSSQHDW HHGFINNTNN QTASDSALWT MSTDTTTTAT GNTNNTNNTG 300 STLNPSQWPD LPGYGPRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023917922.1	1e-175	dof zinc finger protein DOF2.1-like
TrEMBL	A0A2I4EAH7	1e-120	A0A2I4EAH7_JUGRE; dof zinc finger protein DOF1.6-like isoform X1
STRING	Gorai.009G168400.1	1e-113	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	5e-32	OBF binding protein 4