PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00235-abinit-gene-1.11-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NF-YB

Protein Properties

Length: 159aa MW: 18161.4 Da PI: 6.5205

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00235-abinit-gene-1.11-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.8	4.4e-55	32	127	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqre 57 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++e augustus_masked-scaffold00235-abinit-gene-1.11-mRNA-1 32 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKE 87 79**************************************************** PP NF-YB 58 krktingddllwalatlGfedyveplkvylkkyrelegek 97 krkt+ngdd++walatlGf+dy+epl+ yl++yrelege+ augustus_masked-scaffold00235-abinit-gene-1.11-mRNA-1 88 KRKTVNGDDICWALATLGFDDYAEPLRRYLQRYRELEGER 127 ***********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.1E-55	28	148	IPR009072	Histone-fold
SuperFamily	SSF47113	1.49E-41	34	147	IPR009072	Histone-fold
Pfam	PF00808	5.9E-28	37	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.1E-19	65	83	No hit	No description
PROSITE pattern	PS00685	0	68	84	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.1E-19	84	102	No hit	No description
PRINTS	PR00615	1.1E-19	103	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MVDNMVNNSE REGFKYHFAG ASTSSGEDGV LKEQDRLLPI ANVGRIMKQI LPPNAKISKE 60 AKETMQECVS EFISFVTGEA SDKCHKEKRK TVNGDDICWA LATLGFDDYA EPLRRYLQRY 120 RELEGERAQQ SKGSNNEEKN EHQTMELKHQ GKQRIQLLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-44	31	122	1	92	Transcription factor HapC (Eurofung)
4g92_B	1e-44	31	122	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023891930.1	1e-100	nuclear transcription factor Y subunit B-4-like
Swissprot	O82248	1e-59	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2N9ECM2	1e-95	A0A2N9ECM2_FAGSY; Uncharacterized protein
STRING	POPTR_0014s12710.1	7e-80	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-53	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]