PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00235-abinit-gene-1.11-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NF-YB | ||||||||
Protein Properties | Length: 159aa MW: 18161.4 Da PI: 6.5205 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 175.8 | 4.4e-55 | 32 | 127 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqre 57 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++e augustus_masked-scaffold00235-abinit-gene-1.11-mRNA-1 32 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKE 87 79****************************************************** PP NF-YB 58 krktingddllwalatlGfedyveplkvylkkyrelegek 97 krkt+ngdd++walatlGf+dy+epl+ yl++yrelege+ augustus_masked-scaffold00235-abinit-gene-1.11-mRNA-1 88 KRKTVNGDDICWALATLGFDDYAEPLRRYLQRYRELEGER 127 *************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.1E-55 | 28 | 148 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.49E-41 | 34 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.9E-28 | 37 | 101 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.1E-19 | 65 | 83 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 68 | 84 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.1E-19 | 84 | 102 | No hit | No description |
PRINTS | PR00615 | 1.1E-19 | 103 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MVDNMVNNSE REGFKYHFAG ASTSSGEDGV LKEQDRLLPI ANVGRIMKQI LPPNAKISKE 60 AKETMQECVS EFISFVTGEA SDKCHKEKRK TVNGDDICWA LATLGFDDYA EPLRRYLQRY 120 RELEGERAQQ SKGSNNEEKN EHQTMELKHQ GKQRIQLLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-44 | 31 | 122 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-44 | 31 | 122 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023891930.1 | 1e-100 | nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | O82248 | 1e-59 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A2N9ECM2 | 1e-95 | A0A2N9ECM2_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0014s12710.1 | 7e-80 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF805 | 32 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 2e-53 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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