PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | augustus_masked-scaffold00231-abinit-gene-1.6-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 192aa MW: 21714.7 Da PI: 9.7583 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7e-05 | 38 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H+++H augustus_masked-scaffold00231-abinit-gene-1.6-mRNA-1 38 FTCNFCKRQFRSAQALGGHMNVH 60 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.71E-6 | 35 | 64 | No hit | No description |
Pfam | PF13912 | 3.8E-7 | 37 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0067 | 38 | 60 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.053 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MEKPYLSKGE GKGKWDSNNF GFEEDHSCGV SWPAKQVFTC NFCKRQFRSA QALGGHMNVH 60 RKDRARLRLL PSSSSNSHNH NPNFTLSPSS KFLPYTHHPL PFLSSPSSSS FDEEKKLELP 120 HLDPLNPQGR NNMNKKRIIG GVLGFEELKG TFARKDELKV LKKEDTIKLG LEIGLLKDPQ 180 ADLDLELRLG FL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023875024.1 | 1e-114 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A2N9EST0 | 6e-59 | A0A2N9EST0_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0002s04260.1 | 2e-38 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2843 | 31 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23130.1 | 1e-28 | C2H2 family protein |