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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
augustus_masked-scaffold00224-abinit-gene-0.5-mRNA-1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
BBR-BPC |
| Protein Properties |
Length: 286aa MW: 31639.1 Da PI: 10.2281 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| augustus_masked-scaffold00224-abinit-gene-0.5-mRNA-1 | genome | THGP | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 344.7 | 2.2e-105 | 1 | 286 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavae 55
md d+s + rn+gyyep++slk +lglqlmssi+e+ r++ + ++++a+++
augustus_masked-scaffold00224-abinit-gene-0.5-mRNA-1 1 MDGDNSLNmRNWGYYEPTTSLKGHLGLQLMSSIPEKPLIGgRNAAVLAGGNNGAFHH 57
899999999*************************8876545777776778999**** PP
GAGA_bind 56 rd.........maflqrdkalaernkalverdnkllalllvenslasalpvgvqvls 103
rd m++ +rd+++++ ++k++++l++ n ++++vl+
augustus_masked-scaffold00224-abinit-gene-0.5-mRNA-1 58 RDigvshstypMDY-MRDAWINQ--------REKYINVLPTPN-------PNYSVLP 98
**999999999999.99999999........789999999766.......47899** PP
GAGA_bind 104 gtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk 160
+t+s++++q+ +++ +l++ e + ++ e++ ++ke+ kkrq ak pk
augustus_masked-scaffold00224-abinit-gene-0.5-mRNA-1 99 ETSSAHHMQM------VQQPPDLSKDERIIST---EETVVEKENGPIKKRQGAKPPK 146
*********9......3344454444433333...345677888899999999**** PP
GAGA_bind 161 ekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtG 217
++k+kk+k+ ++++k ++++sa++ + a kk++++v+ng+++D+s++P+PvCsCtG
augustus_masked-scaffold00224-abinit-gene-0.5-mRNA-1 147 STKEKKAKRAPRATKA-ESSPSAPRARSAAKKTTEIVINGIDMDISGIPIPVCSCTG 202
********97777655.55556567778899************************** PP
GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmS gafkk+LekLaa
augustus_masked-scaffold00224-abinit-gene-0.5-mRNA-1 203 TPQQCYRWGSGGWQSACCTTNMSIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAA 259
********************************************************* PP
GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
eGyd+sn +DL++hWAkHGtnkfvtir
augustus_masked-scaffold00224-abinit-gene-0.5-mRNA-1 260 EGYDFSNQIDLRTHWAKHGTNKFVTIR 286
**************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MDGDNSLNMR NWGYYEPTTS LKGHLGLQLM SSIPEKPLIG GRNAAVLAGG NNGAFHHRDI 60
GVSHSTYPMD YMRDAWINQR EKYINVLPTP NPNYSVLPET SSAHHMQMVQ QPPDLSKDER 120
IISTEETVVE KENGPIKKRQ GAKPPKSTKE KKAKRAPRAT KAESSPSAPR ARSAAKKTTE 180
IVINGIDMDI SGIPIPVCSC TGTPQQCYRW GSGGWQSACC TTNMSIYPLP MSTKRRGARI 240
AGRKMSIGAF KKVLEKLAAE GYDFSNQIDL RTHWAKHGTN KFVTIR
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
