PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00195-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 390aa    MW: 43054.1 Da    PI: 8.2612
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00195-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.4e-4092168278
                                                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS CS
                                                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDee 58 
                                                           C v+gC++dls++++yhrrh+vCe hsk+pvv+v g+eqrfCqqCsrfh+l efDe 
  augustus_masked-scaffold00195-abinit-gene-0.0-mRNA-1  92 CLVDGCKSDLSNCRDYHRRHRVCERHSKTPVVIVGGKEQRFCQQCSRFHSLGEFDEV 148
                                                           ********************************************************* PP

                                                           --S-STTTT-------S--- CS
                                                   SBP  59 krsCrrrLakhnerrrkkqa 78 
                                                           krsCr+rL++hn rrrk+q+
  augustus_masked-scaffold00195-abinit-gene-0.0-mRNA-1 149 KRSCRKRLDGHNMRRRKSQS 168
                                                           *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-3386153IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.5989166IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.12E-3790171IPR004333Transcription factor, SBP-box
PfamPF031102.2E-3092165IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDWDWKEFPW DSIELEPKED SSLSSLVDSS SLAGQMNRGG GLLVDLKLGR ISDLEERSAA  60
GLKDLGASTM VSSPSGSSKR ARVLSGTQSV SCLVDGCKSD LSNCRDYHRR HRVCERHSKT  120
PVVIVGGKEQ RFCQQCSRFH SLGEFDEVKR SCRKRLDGHN MRRRKSQSES LYLNTEKFLS  180
NYKGTRILQF CSPHIHASGN TNMRSTWPGI TRSEAESMIY NRQQRLHITD RKRSPNSFAF  240
IYNEENKLFS FSQENGTKLG TQAVPKASLY QSLPNSIASS ESGRGNNNMS SSGMTQSIDL  300
GFALYLLSSP PVSQTSAIGL SQLVQSSVSH PIQSLDSGQQ LTGVAPYSCS QGVRDKSAGL  360
VFVPDANETN MYCNDMFQGA LDALLENEAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-26921651184squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165MRRRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921976.10.0squamosa promoter-binding-like protein 16
TrEMBLA0A2N9IRA50.0A0A2N9IRA5_FAGSY; Uncharacterized protein
STRINGXP_010250660.11e-113(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-42SBP family protein