PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00103-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TCP
Protein Properties Length: 370aa    MW: 41031.9 Da    PI: 8.6361
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00103-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP882.1e-2749126366
                                                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpai 59 
                                                           g+kdrhsk++T +g+RdRR+Rls+++a +++dLqd+LG+ ++sk i+WLl + k  i
  augustus_masked-scaffold00103-abinit-gene-0.0-mRNA-1  49 GGKDRHSKVCTIRGLRDRRIRLSVPTAVQLYDLQDRLGLNQPSKVIDWLLDATKLDI 105
                                                           79******************************************************* PP

                                                   TCP  60 keltgt..............s 66 
                                                           ++l+ +              s
  augustus_masked-scaffold00103-abinit-gene-0.0-mRNA-1 106 DKLPPLpipqgfsqfhpqlfS 126
                                                           *****9554444433333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.32550108IPR017887Transcription factor TCP subgroup
PfamPF036342.1E-2550118IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MISNSREKGI QAKQEGEANA EKLSKAASSS RQWSGFRNPR IVRVSRSFGG KDRHSKVCTI  60
RGLRDRRIRL SVPTAVQLYD LQDRLGLNQP SKVIDWLLDA TKLDIDKLPP LPIPQGFSQF  120
HPQLFSHEPN AFQPSFIPSF DANPTFINDG ADQYAMEKSK YWDLDAAFRL KSKEVETGGS  180
AADKGKWVKT NEEVIQEGIG GYSGQISAQK FFPMATDRSS NSLPGLLNNA MAYNSYHHSE  240
PSSLSLSQFG SHGLFPSQMN PHTSNAIQLP SSLPLPPASQ FFFCPSTTTP ALFTPYSSYI  300
TTPIESDPRQ FNHFQFLSSS SQHVLPHPLM PPSLHSMSLP LKSFPTNENS KLPQSQEDDG  360
SRVDKDNTGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1855109155Putative transcription factor PCF6
5zkt_B4e-1855109155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905904.10.0transcription factor TCP5
TrEMBLA0A2N9H7S90.0A0A2N9H7S9_FAGSY; Uncharacterized protein
STRINGEOY220941e-140(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-44TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5