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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
augustus_masked-scaffold00068-abinit-gene-0.5-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
GRAS |
| Protein Properties |
Length: 449aa MW: 50015.6 Da PI: 6.4647 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| augustus_masked-scaffold00068-abinit-gene-0.5-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 418.3 | 6.4e-128 | 47 | 448 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svs 58
+lL++cAe +s +d+++a++l++ ls+++s +gd+++Rl++ f++AL+ rl++ s+s
augustus_masked-scaffold00068-abinit-gene-0.5-mRNA-1 47 QLLIRCAELISRSDFSAAHRLISILSTNSSLYGDSTERLVHQFAKALSLRLNNfSSS 103
89***************************************************6555 PP
GRAS 59 elykalppsetseknsseelaal................................kl 83
+ +++ + + +++ s +++a+
augustus_masked-scaffold00068-abinit-gene-0.5-mRNA-1 104 SGASTAGSAAINTSASLASTSAFvtraatsissnidinadtesvsdsddslqscyLS 160
555555555555555555555556789999*******************99875444 PP
GRAS 84 fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegp 139
+++++P+++fshltaNqaIlea+++ +++Hi+Dfdi++GlQWp+L+qaLa+R+ +p
augustus_masked-scaffold00068-abinit-gene-0.5-mRNA-1 161 LNQITPFIRFSHLTANQAILEAIDEGrQAIHILDFDIMHGLQWPPLMQALAERSYPP 217
***********************86659***************************** PP
GRAS 140 pslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..vakrledl.elee 193
p+lRiT+ g+ + + l++tg+rL+kfA++lg++f+f++l v+++++++ ++ +
augustus_masked-scaffold00068-abinit-gene-0.5-mRNA-1 218 PMLRITATGN----DPNILHRTGDRLSKFAQTLGLRFQFHPLliVSNDINCIiDPLA 270
**********....9**************************987778998876999* PP
GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
L+++p+Eala+n+vl lh+ll+e+ + +L+ +k l+Pkvv+++eqea+hn+
augustus_masked-scaffold00068-abinit-gene-0.5-mRNA-1 271 LALHPDEALAINCVLYLHKLLKEDSRGL---RLFLHKIKALNPKVVTIAEQEANHNH 324
*********************6665555...59************************ PP
GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
+ Fl+r++eal++y+++fdslea+lp++s+er vE++++greiv++va+eg +rre
augustus_masked-scaffold00068-abinit-gene-0.5-mRNA-1 325 PVFLQRLVEALDHYTSVFDSLEATLPPNSRERLAVEQVWFGREIVDIVAAEGVNRRE 381
********************************************************* PP
GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
rh+++e W+ +l+++GF++vpls +a +qaklllr ++ s+gy+++ +++sl+lgW+
augustus_masked-scaffold00068-abinit-gene-0.5-mRNA-1 382 RHQRYEAWEVMLRSSGFSNVPLSPFALSQAKLLLRLHYpSEGYKLQIRNDSLFLGWQ 438
********************************************************* PP
GRAS 364 drpLvsvSaW 373
+r+L+svS+W
augustus_masked-scaffold00068-abinit-gene-0.5-mRNA-1 439 NRALFSVSSW 448
********** PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 449 aa
Download sequence Send
to blast |
MFIGSFSSSH HDQQAEDQED PISSSDLQFI PANPSQPPLP NAIHMPQLLI RCAELISRSD 60
FSAAHRLISI LSTNSSLYGD STERLVHQFA KALSLRLNNF SSSSGASTAG SAAINTSASL 120
ASTSAFVTRA ATSISSNIDI NADTESVSDS DDSLQSCYLS LNQITPFIRF SHLTANQAIL 180
EAIDEGRQAI HILDFDIMHG LQWPPLMQAL AERSYPPPML RITATGNDPN ILHRTGDRLS 240
KFAQTLGLRF QFHPLLIVSN DINCIIDPLA LALHPDEALA INCVLYLHKL LKEDSRGLRL 300
FLHKIKALNP KVVTIAEQEA NHNHPVFLQR LVEALDHYTS VFDSLEATLP PNSRERLAVE 360
QVWFGREIVD IVAAEGVNRR ERHQRYEAWE VMLRSSGFSN VPLSPFALSQ AKLLLRLHYP 420
SEGYKLQIRN DSLFLGWQNR ALFSVSSWH
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
