PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C027391P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 305aa    MW: 33954 Da    PI: 5.9324
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C027391P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18225259135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  MELO3C027391P1 225 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 259
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-841303IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.66E-14218281No hitNo description
SMARTSM004012.4E-16219273IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.807219255IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-14223257IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.63E-14224272No hitNo description
PfamPF003201.7E-16225259IPR000679Zinc finger, GATA-type
PROSITE patternPS003440225250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MECVRLSPQL CFNPQNVVSS DDFFVDQLLD LSDHDEFLQD QTPDDDDDDD KPSVSLSNFV  60
SAQEIHQDSI VSDLPSLPSS ELTVPADDLE DLEWLSHFVE DSFSGFSAPF PSLMKSSKEI  120
STLEEQLEDD GSVSPPEPCF KTPIPVKARS KRRRTSGRVW CLRSPSLTDS SSCSTTSSSS  180
SSPASPWLII SNRFEPEIPV TKKRRRKSPS EKSRITIGAQ PPRRCSHCGV QKTPQWRTGP  240
LGAKTLCNAC GVRFKSGRLL PEYRPACSPT FSSELHSNHH RKVLEMRRKK EVTAPAEFLT  300
VEKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206KKRRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6832810.0LN683281.1 Cucumis melo genomic scaffold, unanchored_scaffold01473.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465634.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH573e-73GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A1S3CPB90.0A0A1S3CPB9_CUCME; GATA transcription factor
STRINGXP_008465634.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-68GATA transcription factor 5