PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C027126P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GeBP | ||||||||
Protein Properties | Length: 406aa MW: 44833.7 Da PI: 10.2753 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 134.1 | 5e-42 | 171 | 267 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 klfqrlwse+Dei++L G+id+ ak+g++ps d++af++f+kks++++v+k ql++KirrLKkK++++ ++ k+g +p+fsk+hdqk felsk+i MELO3C027126P1 171 KLFQRLWSEDDEIAILNGMIDYSAKKGSDPSLDMNAFHDFIKKSLHVDVTKAQLMDKIRRLKKKYRNNADRGKKGADPTFSKAHDQKGFELSKRI 265 579******************************************************************************************** PP DUF573 96 Wg 97 Wg MELO3C027126P1 266 WG 267 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.7E-37 | 173 | 267 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MSLRQRLPPK KKKPHQARRR KALINRDGSS SEEEEEDEEE TQAQTQKPKK PSSPSTPAVE 60 KKPVPKKSQP STNTQAQSSS SESGSGSDTD SDTESGRNVK PIASKPMEET PKVKKPRSKP 120 SASATPARPS LKKPGESTRH AKRPKKSSEA DADDGVVAED DSKKSVDESK KLFQRLWSED 180 DEIAILNGMI DYSAKKGSDP SLDMNAFHDF IKKSLHVDVT KAQLMDKIRR LKKKYRNNAD 240 RGKKGADPTF SKAHDQKGFE LSKRIWGGEG ILRTPAVEQL KPNANGTPKK NQRGNTGKSV 300 ASLKAELLPS PDAPKEDGKM KVDDCEAPSG CMDGFVAFER SLGAVGLPES FLKPRLELIG 360 QSKRTVLEEE WKKLHLAELE LFLKRTELIR DQTKLILDAY KSSSK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN682225 | 0.0 | LN682225.1 Cucumis melo genomic scaffold, unanchored_scaffold00386. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008465540.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | A0A1S3CP12 | 0.0 | A0A1S3CP12_CUCME; mediator-associated protein 1-like | ||||
STRING | XP_008465540.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-43 | DNA-binding storekeeper protein-related transcriptional regulator |