PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C027042P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

SRS

Protein Properties

Length: 266aa MW: 28899 Da PI: 6.4119

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C027042P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	101.9	1.1e-31	101	162	6	67
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa 67 +sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpa+krr+r + ++sk+ +++ MELO3C027042P1 101 TSCQDCGNQAKKDCAHMRCRTCCKSRGFECETHVKSTWVPASKRRDRLLRSDGLNSKRPKDT 162 69*********************************************988888777766654 PP
2	DUF702	83.9	3.9e-26	164	225	93	154
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +++ l+++++P ev ++avfrcvr++++d+ ++++aYqtav+igGh+fkGiLyd+G+e+ MELO3C027042P1 164 YHPTSSGLDMANFPMEVTTPAVFRCVRMTTLDETDDQYAYQTAVNIGGHIFKGILYDHGPEQ 225 455667889999************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-52	101	224	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.2E-27	102	144	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-24	176	223	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MAGFFPLDGG GSGGRVPNYH FPTPTTGGEI IHPTTEGLFW YKNYERLETW EGEEEHQQQQ 60 QPAQEQGGEG FVYSGDESPA RSSLVMVRSG RGGGSGGGPV TSCQDCGNQA KKDCAHMRCR 120 TCCKSRGFEC ETHVKSTWVP ASKRRDRLLR SDGLNSKRPK DTHYHPTSSG LDMANFPMEV 180 TTPAVFRCVR MTTLDETDDQ YAYQTAVNIG GHIFKGILYD HGPEQPPPPP SSSSAAALLD 240 STPPYPTPLS TYITAGTQFF LPPSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN682015	0.0	LN682015.1 Cucumis melo genomic scaffold, unanchored_scaffold00177.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008465489.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-52	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S3CNX3	0.0	A0A1S3CNX3_CUCME; protein SHI RELATED SEQUENCE 1-like
STRING	XP_008465489.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24705	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	5e-51	SHI-related sequence 7

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]