PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C026920P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 187aa MW: 20529 Da PI: 5.6972 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101.6 | 1.3e-31 | 38 | 107 | 8 | 73 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....sec 73 +++h+kv gRdRR+Rl+ +caar+F+L++eLG ++d++t+eWLl++a+p+i++ltg + sa c MELO3C026920P1 38 PKDRHAKVHGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKNIASAtldlPGC 107 59********************************************************555553333222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-27 | 38 | 116 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.43 | 38 | 92 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MGSKNMRVKK PTSNSPRNAP KLNSPIASES KLIPSKAPKD RHAKVHGRDR RIRLPPLCAA 60 RVFQLTRELG NKTDGQTVEW LLKKAEPSII ALTGKNIASA TLDLPGCSKP FDPSSSNINS 120 TTTSYFEEET LGGNNYAFPT VNECIPLPNY EFDLVSDFDM ELFAHHIATL QEVAENSEQE 180 TEDGDD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681935 | 0.0 | LN681935.1 Cucumis melo genomic scaffold, unanchored_scaffold00115. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008465370.1 | 1e-137 | PREDICTED: transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-26 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1S3CNQ2 | 1e-136 | A0A1S3CNQ2_CUCME; transcription factor TCP7 | ||||
STRING | XP_008465370.1 | 1e-137 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-28 | TCP family protein |