PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C026896P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 399aa MW: 43149.1 Da PI: 8.7003

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C026896P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.4e-34	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFveav+qLGG++kAtPkt++++m+++gLtl+h+kSHLQkYRl MELO3C026896P1 40 KPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.267	37	97	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-31	38	95	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.6E-17	39	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	40	95	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-9	42	93	IPR001005	SANT/Myb domain
Pfam	PF14379	6.6E-23	155	201	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MYHHQHRGKS IHSSERHMFL QGGGNGGGGD SGLVLSTDAK PRLKWTPDLH DRFVEAVNQL 60 GGADKATPKT VMKIMGIPGL TLYHLKSHLQ KYRLSKNLHG QANGGSGTNK TGTVAVSVDQ 120 RLGEANGAAA AAAAARTNSI VVGPQPSSQS NKNLQISETI QMQIEVQKRL HEQLEVQRHL 180 QLRIETQGKY LQTVLEKAQE TLGRQNLGTV GLEAAKVQLS ELVSKVSTQC LTAAFPELHN 240 QSQSQRVCAQ QQSQPPDCSM DSCLTSSEGG SKDQQAAQQQ QQQQQVLLHN SHLALRPYAD 300 RASSGAPDHS LHGLSMSIGL VQGEKAGTEA YNGYSTSEGQ RLFGSKRTTK EAVLEKETGF 360 RYRMDLNNAG EDQLISSNSN NDHTSSTTCK MFDLNGFS*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MYHHQHRGKS IHSSERHMFL QGGGNGGGGD SGLVLSTDAK PRLKWTPDLH DRFVEAVNQL  60
GGADKATPKT VMKIMGIPGL TLYHLKSHLQ KYRLSKNLHG QANGGSGTNK TGTVAVSVDQ  120
RLGEANGAAA AAAAARTNSI VVGPQPSSQS NKNLQISETI QMQIEVQKRL HEQLEVQRHL  180
QLRIETQGKY LQTVLEKAQE TLGRQNLGTV GLEAAKVQLS ELVSKVSTQC LTAAFPELHN  240
QSQSQRVCAQ QQSQPPDCSM DSCLTSSEGG SKDQQAAQQQ QQQQQVLLHN SHLALRPYAD  300
RASSGAPDHS LHGLSMSIGL VQGEKAGTEA YNGYSTSEGQ RLFGSKRTTK EAVLEKETGF  360
RYRMDLNNAG EDQLISSNSN NDHTSSTTCK MFDLNGFS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-20	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681839	0.0	LN681839.1 Cucumis melo genomic scaffold, anchoredscaffold00114.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008465332.1	0.0	PREDICTED: uncharacterized protein LOC103502977 isoform X2
Swissprot	Q9SQQ9	1e-116	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A1S3CNM7	0.0	A0A1S3CNM7_CUCME; uncharacterized protein LOC103502977 isoform X2
STRING	XP_008465330.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-106	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]