PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C026879P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 403aa MW: 42825.6 Da PI: 6.8062

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C026879P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.8e-10	203	251	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + MELO3C026879P1 203 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQ 251 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-16	199	263	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.829	201	264	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.4E-10	203	257	No hit	No description
SuperFamily	SSF57959	7.74E-11	203	254	No hit	No description
Pfam	PF00170	1.3E-8	203	251	IPR004827	Basic-leucine zipper domain
CDD	cd14703	4.97E-22	204	253	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MQDPPPPSNP IPTPNSNQIP PLNVTQPPPK THKPPPPPVS NATAAASSSS IFPNVNVGNA 60 SFIPRLGSHH RRAHSEVSFR LPEDMMDISG SDPFNGGSST ASLEEIGSED DLFSTYIDVK 120 KLGGNGGGNF VDHNGNGGCE GGGGGGGGGG GSSEGEKTSK PRHRHSVSVD GTTSSSSMFG 180 EIMEAKKAMP PDKLAELWSS DPKRAKRILA NRQSAARSKE RKARYIQELE RKVQTLQTEA 240 TTLSAQLTLF QRDTTGLSTE NTELKLRLQA MEQQAQLRDA LNEALKKEVE RLKIATGEMM 300 SPSESFNLGM HHMAYAPSSF IQLSQQQTGS TGLQNMQIPQ FGHSPSNMST HPLLPSDSHS 360 LSEVLQTDSL GRLQGLDISS KGSSLVKSEG PSLSASESST TF*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MQDPPPPSNP IPTPNSNQIP PLNVTQPPPK THKPPPPPVS NATAAASSSS IFPNVNVGNA  60
SFIPRLGSHH RRAHSEVSFR LPEDMMDISG SDPFNGGSST ASLEEIGSED DLFSTYIDVK  120
KLGGNGGGNF VDHNGNGGCE GGGGGGGGGG GSSEGEKTSK PRHRHSVSVD GTTSSSSMFG  180
EIMEAKKAMP PDKLAELWSS DPKRAKRILA NRQSAARSKE RKARYIQELE RKVQTLQTEA  240
TTLSAQLTLF QRDTTGLSTE NTELKLRLQA MEQQAQLRDA LNEALKKEVE RLKIATGEMM  300
SPSESFNLGM HHMAYAPSSF IQLSQQQTGS TGLQNMQIPQ FGHSPSNMST HPLLPSDSHS  360
LSEVLQTDSL GRLQGLDISS KGSSLVKSEG PSLSASESST TF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681920	0.0	LN681920.1 Cucumis melo genomic scaffold, anchoredscaffold00113.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008465307.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-109	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1S3CQ24	0.0	A0A1S3CQ24_CUCME; transcription factor RF2b-like
STRING	XP_008465307.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	5e-95	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]