PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026410P4
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 525aa    MW: 58236.5 Da    PI: 7.0675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026410P4genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.91.4e-16355401455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRR+riN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  MELO3C026410P4 355 VHNLSERRRRERINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 401
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-21348416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.59351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-20355409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-14355401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.54E-9365405No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MNYCFPDWNF EGDLPPAKKS TGPEHDDLVE LLWRNGQVVL QSQKAKKSSL IANEVRQFQK  60
QNQPLYRSNV SCGNSSNLIQ DDETVSWIQD PLDDSFEKEF CSNFFSELPP ADPIDIVKQP  120
IKHFQDDKQT RFGAFDTSTH VTFGNSVKKS SKPPAALAEF PMNTMPPPRF QFQDSSRQNK  180
DLGDLGKLVN FSQVPAPPLK GDLGSSNGGK ESGNLIQGEG RDCSAMTVGS SHCGSNQVPN  240
PNDLDLSRVS TSGFRNAGLS AGLSKEDNRK LVAQGERDKT ETMDPTATSS SGGSGSSMDR  300
SRTIGQSTGG NSNKRKGRDG EESECQSETA ELESAEGNKT APRSGSSRRT RAAEVHNLSE  360
RRRRERINEK MKALQELIPH CNKTDKASML DEAIEYLKSL QLQLQVMWMG SGMAPMMFPS  420
VQHYMSRMAM GMGMAQPSMP SIHNSMQLPR VPMVDQSVSV APTPNQPMMC QPQMFNPMNY  480
QNQMQNPALQ EQYARLMGFH HMQPASQVRI GLHLEFFLWM FCCK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359364ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818640.0LN681864.1 Cucumis melo genomic scaffold, anchoredscaffold00092.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464685.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_008464686.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_008464687.10.0PREDICTED: transcription factor PIF4-like
TrEMBLA0A1S3CMJ50.0A0A1S3CMJ5_CUCME; transcription factor PIF4-like
STRINGXP_008464685.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.36e-51phytochrome interacting factor 3-like 5