PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C026410P3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 561aa MW: 61554 Da PI: 7.2844 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.8 | 1.5e-16 | 355 | 401 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRR+riN+++ L+el+P++ K +Ka++L +A+eY+ksLq MELO3C026410P3 355 VHNLSERRRRERINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 401 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.33E-21 | 348 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.59 | 351 | 400 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-20 | 355 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-14 | 355 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-18 | 357 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.17E-9 | 365 | 405 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MNYCFPDWNF EGDLPPAKKS TGPEHDDLVE LLWRNGQVVL QSQKAKKSSL IANEVRQFQK 60 QNQPLYRSNV SCGNSSNLIQ DDETVSWIQD PLDDSFEKEF CSNFFSELPP ADPIDIVKQP 120 IKHFQDDKQT RFGAFDTSTH VTFGNSVKKS SKPPAALAEF PMNTMPPPRF QFQDSSRQNK 180 DLGDLGKLVN FSQVPAPPLK GDLGSSNGGK ESGNLIQGEG RDCSAMTVGS SHCGSNQVPN 240 PNDLDLSRVS TSGFRNAGLS AGLSKEDNRK LVAQGERDKT ETMDPTATSS SGGSGSSMDR 300 SRTIGQSTGG NSNKRKGRDG EESECQSETA ELESAEGNKT APRSGSSRRT RAAEVHNLSE 360 RRRRERINEK MKALQELIPH CNKTDKASML DEAIEYLKSL QLQLQVMWMG SGMAPMMFPS 420 VQHYMSRMAM GMGMAQPSMP SIHNSMQLPR VPMVDQSVSV APTPNQPMMC QPQMFNPMNY 480 QNQMQNPALQ EQYARLMGFH HMQPASQPIN VFRFCPSAVL QSQPAAAPGP ASGPTAGGSI 540 TNDIVNGNLG KSYRSFLLYH * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 359 | 364 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681864 | 0.0 | LN681864.1 Cucumis melo genomic scaffold, anchoredscaffold00092. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008464685.1 | 0.0 | PREDICTED: transcription factor PIF4-like | ||||
Refseq | XP_008464686.1 | 0.0 | PREDICTED: transcription factor PIF4-like | ||||
Refseq | XP_008464687.1 | 0.0 | PREDICTED: transcription factor PIF4-like | ||||
TrEMBL | A0A1S3CMJ5 | 0.0 | A0A1S3CMJ5_CUCME; transcription factor PIF4-like | ||||
STRING | XP_008464685.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8146 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 7e-51 | phytochrome interacting factor 3-like 5 |