PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026410P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 390aa    MW: 42023.2 Da    PI: 8.3789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026410P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.59.1e-17194240455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRR+riN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  MELO3C026410P2 194 VHNLSERRRRERINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 240
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-21187255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.59190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-21194248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-14194240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-9204244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MNTMPPPRFQ FQDSSRQNKD LGDLGKLVNF SQVPAPPLKG DLGSSNGGKE SGNLIQGEGR  60
DCSAMTVGSS HCGSNQVPNP NDLDLSRVST SGFRNAGLSA GLSKEDNRKL VAQGERDKTE  120
TMDPTATSSS GGSGSSMDRS RTIGQSTGGN SNKRKGRDGE ESECQSETAE LESAEGNKTA  180
PRSGSSRRTR AAEVHNLSER RRRERINEKM KALQELIPHC NKTDKASMLD EAIEYLKSLQ  240
LQLQVMWMGS GMAPMMFPSV QHYMSRMAMG MGMAQPSMPS IHNSMQLPRV PMVDQSVSVA  300
PTPNQPMMCQ PQMFNPMNYQ NQMQNPALQE QYARLMGFHH MQPASQPINV FRFCPSAVLQ  360
SQPAAAPGPA SGPTAGGSIT NDIVNGNLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818640.0LN681864.1 Cucumis melo genomic scaffold, anchoredscaffold00092.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464685.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_008464686.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_008464687.10.0PREDICTED: transcription factor PIF4-like
TrEMBLA0A1S3CMJ50.0A0A1S3CMJ5_CUCME; transcription factor PIF4-like
STRINGXP_008464685.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-47phytochrome interacting factor 4