PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026300P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 182aa    MW: 21229.5 Da    PI: 9.8322
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026300P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.66.2e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  MELO3C026300P3  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box99.74.1e-33831711098
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +++ es+++e+ kLk++ e+Lqr+qR+llGedL++L+ keL+qLe+qLe+slk++Rs+K++++l+q+++lq+ke++l e+n+aL++k+
  MELO3C026300P3  83 PAKELESSYREYVKLKSRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQMKV 171
                     5678999*******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.66161IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-33277IPR002100Transcription factor, MADS-box
CDDcd002656.05E-42276No hitNo description
PRINTSPR004045.6E-32323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-2784171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.89287177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRGIVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SNMLKTLERY QKCSYGAVEV TKPAKELESS YREYVKLKSR FESLQRTQRN LLGEDLGPLN  120
SKELEQLERQ LESSLKQVRS TKTQYMLDQL SDLQNKEQML IETNRALQMK VINQYFYSYT  180
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-37751731103Developmental protein SEPALLATA 3
4ox0_B3e-37751731103Developmental protein SEPALLATA 3
4ox0_C3e-37751731103Developmental protein SEPALLATA 3
4ox0_D3e-37751731103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1359620.0AF135962.1 Cucumis sativus CAGL2 (CAGL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464576.11e-119PREDICTED: developmental protein SEPALLATA 1
SwissprotP293821e-106SEP1_ARATH; Developmental protein SEPALLATA 1
TrEMBLA0A1S3CLU01e-117A0A1S3CLU0_CUCME; developmental protein SEPALLATA 1
STRINGXP_008464576.11e-118(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-95MIKC_MADS family protein