PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C026266P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 104aa MW: 11995 Da PI: 10.0464 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++ +G g+W+++++ g+ R++k+c++rw +yl MELO3C026266P1 14 KGLWSPEEDEKLFNYITTFGVGCWSSVPKLAGLERCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 23.7 | 1.1e-07 | 67 | 100 | 1 | 33 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..T CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..k 33 rg ++++E++l++ +++ lG++ W+ Ia+ + k MELO3C026266P1 67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLLlrK 100 789*******************.*****9987444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.421 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-24 | 11 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-10 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-14 | 65 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4 | 66 | 103 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.708 | 66 | 103 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.1E-6 | 67 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00725 | 70 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MGRNSCCLKP KLRKGLWSPE EDEKLFNYIT TFGVGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLLLRK NRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-20 | 7 | 96 | 20 | 108 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681814 | 8e-69 | LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089. | |||
GenBank | LN713256 | 8e-69 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022134589.1 | 1e-68 | protein ODORANT1-like | ||||
Swissprot | Q8LPH6 | 3e-53 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A1S3CLT8 | 1e-65 | A0A1S3CLT8_CUCME; transcription factor MYB32-like isoform X1 | ||||
TrEMBL | A0A1S4E4P4 | 7e-66 | A0A1S4E4P4_CUCME; transcription factor MYB86-like isoform X3 | ||||
STRING | XP_008464521.1 | 2e-66 | (Cucumis melo) | ||||
STRING | XP_004155089.1 | 2e-66 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5831 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 5e-57 | myb domain protein 55 |