PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C026237P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GRAS | ||||||||
Protein Properties | Length: 512aa MW: 56770.2 Da PI: 6.0112 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 336.2 | 6.1e-103 | 140 | 510 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn...sseelaalklfsevsPilk 92 +lL++cAeav+ +d + a+ lL++l+ +a g+++qR+a++f+++La rla ++ y + p ++ ++ +++ al+l +e+ P ++ MELO3C026237P1 140 LQLLVACAEAVACRDRSHASILLSELRANALVFGSSFQRVASCFVQGLADRLALVQPLGYVGFgLPIMSRVDHssdRKKKDEALNLAYEIYPHIQ 234 699**************************************************97776666554333333333112555556667799******* PP GRAS 93 fshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 f+h++aN+ Ile +ege+ vH++D+++ +G QW +L+++La+ +++ lR+Tg+g s ++++ +ge+L+ Ae +gv++e + v+ MELO3C026237P1 235 FGHFVANSSILEVFEGENSVHVLDLGMAfglpYGHQWHSLIESLAE-SSNRRLLRVTGIGL----SVNRYRVMGEKLKAHAEGVGVQVEVLA-VE 323 ************************87762222678**********9.57779*********....9***********************999.79 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +le+l++++++++ gEal++ +++q+h +++es +vL+++ +lsPk +v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ MELO3C026237P1 324 GNLENLRPQDIKLHDGEALVITSIFQMHCVVKESRGALT---SVLRMIYDLSPKALVLVEQDSNHNGPFFLGRFMEALHYYSAIFDSLDAMLPKY 415 9*****************************977665555...8**************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 + r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF++ p++ +++qak + k+k ++gy++ ee+g+lvlgWk++p+v+ S+ MELO3C026237P1 416 DTRRAKIEQFYFAEEIKNIVSCEGMARVERHERVDQWRRRMSRAGFQASPIK--VMAQAKQWIGKFKaNEGYTIVEEKGCLVLGWKSKPIVASSC 508 **************************************************95..899************************************** PP GRAS 373 Wr 374 W+ MELO3C026237P1 509 WK 510 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 52.978 | 113 | 491 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-100 | 140 | 510 | IPR005202 | Transcription factor GRAS |
Gene3D | G3DSA:3.40.50.150 | 0.001 | 277 | 463 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MALDGDGGSF FSTDFTSITK EDEDTVGESG AAHWLSLLDD TTAASRWVIS FSDEFRRKRP 60 KIETESTPTE DGSGNSSNNS RSLSRSDSCD SLSTGFRAHI WTYNQRYLAA EAVEEAAAAI 120 INAEESAAEE DASADGMRLL QLLVACAEAV ACRDRSHASI LLSELRANAL VFGSSFQRVA 180 SCFVQGLADR LALVQPLGYV GFGLPIMSRV DHSSDRKKKD EALNLAYEIY PHIQFGHFVA 240 NSSILEVFEG ENSVHVLDLG MAFGLPYGHQ WHSLIESLAE SSNRRLLRVT GIGLSVNRYR 300 VMGEKLKAHA EGVGVQVEVL AVEGNLENLR PQDIKLHDGE ALVITSIFQM HCVVKESRGA 360 LTSVLRMIYD LSPKALVLVE QDSNHNGPFF LGRFMEALHY YSAIFDSLDA MLPKYDTRRA 420 KIEQFYFAEE IKNIVSCEGM ARVERHERVD QWRRRMSRAG FQASPIKVMA QAKQWIGKFK 480 ANEGYTIVEE KGCLVLGWKS KPIVASSCWK C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-51 | 146 | 509 | 26 | 378 | Protein SCARECROW |
5b3h_A | 5e-51 | 146 | 509 | 25 | 377 | Protein SCARECROW |
5b3h_D | 5e-51 | 146 | 509 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681814 | 0.0 | LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008464481.1 | 0.0 | PREDICTED: DELLA protein GAI-like | ||||
TrEMBL | A0A1S3CLP8 | 0.0 | A0A1S3CLP8_CUCME; DELLA protein GAI-like | ||||
STRING | XP_008464481.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8730 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 9e-71 | RGA-like 1 |