PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026237P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 512aa    MW: 56770.2 Da    PI: 6.0112
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026237P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.26.1e-1031405102374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn...sseelaalklfsevsPilk 92 
                      +lL++cAeav+ +d + a+ lL++l+ +a   g+++qR+a++f+++La rla  ++  y  +  p  ++ ++    +++  al+l +e+ P ++
  MELO3C026237P1 140 LQLLVACAEAVACRDRSHASILLSELRANALVFGSSFQRVASCFVQGLADRLALVQPLGYVGFgLPIMSRVDHssdRKKKDEALNLAYEIYPHIQ 234
                     699**************************************************97776666554333333333112555556667799******* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                     f+h++aN+ Ile +ege+ vH++D+++     +G QW +L+++La+ +++   lR+Tg+g     s ++++ +ge+L+  Ae +gv++e  + v+
  MELO3C026237P1 235 FGHFVANSSILEVFEGENSVHVLDLGMAfglpYGHQWHSLIESLAE-SSNRRLLRVTGIGL----SVNRYRVMGEKLKAHAEGVGVQVEVLA-VE 323
                     ************************87762222678**********9.57779*********....9***********************999.79 PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      +le+l++++++++ gEal++ +++q+h +++es        +vL+++ +lsPk +v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ 
  MELO3C026237P1 324 GNLENLRPQDIKLHDGEALVITSIFQMHCVVKESRGALT---SVLRMIYDLSPKALVLVEQDSNHNGPFFLGRFMEALHYYSAIFDSLDAMLPKY 415
                     9*****************************977665555...8**************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                     +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF++ p++  +++qak  + k+k ++gy++ ee+g+lvlgWk++p+v+ S+
  MELO3C026237P1 416 DTRRAKIEQFYFAEEIKNIVSCEGMARVERHERVDQWRRRMSRAGFQASPIK--VMAQAKQWIGKFKaNEGYTIVEEKGCLVLGWKSKPIVASSC 508
                     **************************************************95..899************************************** PP

            GRAS 373 Wr 374
                     W+
  MELO3C026237P1 509 WK 510
                     *8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.978113491IPR005202Transcription factor GRAS
PfamPF035142.1E-100140510IPR005202Transcription factor GRAS
Gene3DG3DSA:3.40.50.1500.001277463IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MALDGDGGSF FSTDFTSITK EDEDTVGESG AAHWLSLLDD TTAASRWVIS FSDEFRRKRP  60
KIETESTPTE DGSGNSSNNS RSLSRSDSCD SLSTGFRAHI WTYNQRYLAA EAVEEAAAAI  120
INAEESAAEE DASADGMRLL QLLVACAEAV ACRDRSHASI LLSELRANAL VFGSSFQRVA  180
SCFVQGLADR LALVQPLGYV GFGLPIMSRV DHSSDRKKKD EALNLAYEIY PHIQFGHFVA  240
NSSILEVFEG ENSVHVLDLG MAFGLPYGHQ WHSLIESLAE SSNRRLLRVT GIGLSVNRYR  300
VMGEKLKAHA EGVGVQVEVL AVEGNLENLR PQDIKLHDGE ALVITSIFQM HCVVKESRGA  360
LTSVLRMIYD LSPKALVLVE QDSNHNGPFF LGRFMEALHY YSAIFDSLDA MLPKYDTRRA  420
KIEQFYFAEE IKNIVSCEGM ARVERHERVD QWRRRMSRAG FQASPIKVMA QAKQWIGKFK  480
ANEGYTIVEE KGCLVLGWKS KPIVASSCWK C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5114650926378Protein SCARECROW
5b3h_A5e-5114650925377Protein SCARECROW
5b3h_D5e-5114650925377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818140.0LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464481.10.0PREDICTED: DELLA protein GAI-like
TrEMBLA0A1S3CLP80.0A0A1S3CLP8_CUCME; DELLA protein GAI-like
STRINGXP_008464481.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-71RGA-like 1