PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C026196P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

SBP

Protein Properties

Length: 181aa MW: 20257.6 Da PI: 9.3271

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C026196P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.6	3.1e-42	91	167	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC +dls+ ++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ MELO3C026196P1 91 CLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGLTQRFCQQCSRFHSLDEFDEGKRSCRKRLDGHNRRRRKPQS 167 **************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-34	83	152	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.633	88	165	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.27E-39	90	170	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.7E-32	91	164	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MDWNLKTPSW DFTQLEQDAL KNINTIGASS NFVEHITTSG DFTVDLKLGQ VSNLGTKYVV 60 NEPGVFKVTP SPSEPSKRAR GSGNGAQPSS CLVDGCVSDL SNYRDYHRRH KVCELHSKTP 120 QVTIGGLTQR FCQQCSRFHS LDEFDEGKRS CRKRLDGHNR RRRKPQSDSL SRSILSHYQG 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-31	81	164	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	164	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681814	0.0	LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008464414.1	1e-131	PREDICTED: squamosa promoter-binding-like protein 13A
Refseq	XP_008464415.1	1e-131	PREDICTED: squamosa promoter-binding-like protein 13A
Refseq	XP_008464416.1	1e-131	PREDICTED: squamosa promoter-binding-like protein 13A
Refseq	XP_008464417.1	1e-131	PREDICTED: squamosa promoter-binding-like protein 13A
Swissprot	B9DI20	4e-47	SP13A_ARATH; Squamosa promoter-binding-like protein 13A
Swissprot	P0DI11	4e-47	SP13B_ARATH; Squamosa promoter-binding-like protein 13B
Swissprot	Q0J0K1	1e-46	SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBL	A0A1S3CLF0	1e-130	A0A1S3CLF0_CUCME; squamosa promoter-binding-like protein 13A
STRING	XP_008464414.1	1e-131	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2591	33	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-49	SBP family protein

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]