PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C026161P3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 755aa MW: 83651.4 Da PI: 7.9764 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.1 | 8.2e-24 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + ++ MELO3C026161P3 147 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 238 99*****************************7333.34459************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ MELO3C026161P3 239 GELRVGVRRA 248 99*****996 PP | |||||||
2 | Auxin_resp | 120.7 | 1.1e-39 | 273 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++++GmRfkm+fe+e+++e+r++Gt++g +d+dp rW++SkWr+Lk MELO3C026161P3 273 AWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLK 355 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.2E-41 | 144 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-40 | 144 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.09E-22 | 145 | 247 | No hit | No description |
Pfam | PF02362 | 9.7E-22 | 147 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-23 | 147 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.012 | 147 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.2E-37 | 273 | 355 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 755 aa Download sequence Send to blast |
MASSEVSINP NSASFNDHAD STKDTSDPPN ALSPRDADIA LYTELWNACA GPLVSVPREN 60 ERVFYFPQGH IEQVEASTSQ VADQQMPVYN LPSKILCRVI NVHLKAEPET DEVFAQITLL 120 PEANQDEHAV DKEPPPPPPR RFHVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR 180 QPPTQELVAK DLHGNEWRFR HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE 240 LRVGVRRAMR QHGNVPSSVI SSHSMHLGVL ATAWHAISTG TMFTVYYKPR TSPSEFIVPY 300 DQYMESIKKS YTIGMRFKMR FEGEEAPEQR FTGTIIGCED ADPKRWKDSK WRCLKVRWDE 360 TSTISRPEKV SPWKIEPALA PPALNPLPMT RPKRPRSNMV STSPDSSVLT REGSSRVTVD 420 PSPASVFTRV LQGQEFSTLR GNFIDGSDPD VAEKSVMWPP SLDDEKVDVV STSKKHGADS 480 WIPPGRSEPT YADLLSGFGA DMDSSLGVRA AMGDSAVVTA NSIRKHAMEQ DGKFSFLGGS 540 SWSVLPSGLS LNLVDSSQKG HIRAGDLSYQ VRGNATFNGF GDHSISHCPR TEQPHGNWLM 600 PPPSSHFDYP IHSSELMSKP MLFQNQDILK PKDGNCKLFG ISLVKNPAIP DPVGLNRNMM 660 NEADVMHSNV HQIHSIESGL KSELPRGSKL ADKSVAISEA DKLQQTCKSQ GTSARSCTKV 720 ACFYTPPKSK KKKETKHTRS FNMFISLRDG SEQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-179 | 40 | 377 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-179 | 40 | 377 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-179 | 40 | 377 | 18 | 354 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU323408 | 0.0 | KU323408.1 UNVERIFIED: Trichosanthes dioica clone TdARF_6 auxin response factor-like mRNA, partial sequence. | |||
GenBank | KU323422 | 0.0 | KU323422.1 UNVERIFIED: Trichosanthes dioica clone TdARF_30 auxin response factor-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008464365.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Refseq | XP_008464366.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Swissprot | K4DF01 | 0.0 | ARF2B_SOLLC; Auxin response factor 2B | ||||
TrEMBL | A0A1S3CLA6 | 0.0 | A0A1S3CLA6_CUCME; Auxin response factor | ||||
TrEMBL | E5GBL7 | 0.0 | E5GBL7_CUCME; Auxin response factor | ||||
STRING | XP_008464365.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
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