PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C025995P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 264aa MW: 31782.3 Da PI: 9.4277 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 71.5 | 1.5e-22 | 32 | 113 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+ e+++L+++r +++++++ k++ lW +v+ km+++gf+rs +qCk+kw+nl +ryk +++++ k ++ ++p++d+l+ MELO3C025995P1 32 WSVLETKELLAIRAALDKNFSEMKQNRMLWISVAGKMKAKGFNRSDEQCKCKWKNLVTRYKGCETMDPKA--LKH-QFPFYDDLH 113 9999****************************************************************95..444.79****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.073 | 31 | 88 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-4 | 31 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.3E-18 | 31 | 114 | No hit | No description |
CDD | cd12203 | 5.37E-17 | 32 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MEDFCDLRRA VRLHRIAGVN ADQAAGDRFP PWSVLETKEL LAIRAALDKN FSEMKQNRML 60 WISVAGKMKA KGFNRSDEQC KCKWKNLVTR YKGCETMDPK ALKHQFPFYD DLHTIFTARM 120 QKNWWVEAEN RSGVLKRKAN EDPNGDRELE NEEKTKTKNV TKKRKWKRDN DLEEHERNLE 180 EILKGFLKRE MEMEREWREA FRVREEERRL KEEEWRMKME GIEREKMTME ILWRENEEKR 240 REREEARAQK TDALISALLT NLT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681884 | 0.0 | LN681884.1 Cucumis melo genomic scaffold, anchoredscaffold00086. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008464203.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b isoform X2 | ||||
Swissprot | O80450 | 1e-55 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A1S3CKY0 | 0.0 | A0A1S3CKY0_CUCME; trihelix transcription factor GT-3b isoform X2 | ||||
STRING | XP_008464200.1 | 1e-143 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 3e-43 | Trihelix family protein |
Publications ? help Back to Top | |||
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