PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025987P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 546aa    MW: 61092.2 Da    PI: 6.5073
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025987P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.61e-1371765452374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L++cA+avs++d+ +aq+l+ +l++++s  g+pmqRl ay++e+L arla+s+s +yk+l+++e +    +e l++++l++ev+P++kf+++
  MELO3C025987P1 176 KKILIACAKAVSDNDALMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPA---RAELLSYMHLLYEVCPYFKFGYM 267
                     789*****************************************************************9...89********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ e+rvHiiDf+isqG+QW++L+qa+a Rp+gpp++RiTg+++p+s   +   l  +g+rL+k+A+ ++vpfef+  +a +  d+
  MELO3C025987P1 268 SANGAIAEAMKDEDRVHIIDFQISQGTQWVTLIQAFAGRPGGPPRIRITGIDDPASAyaRGGGLDIVGKRLSKLAKLFNVPFEFHS-AAISGCDV 361
                     *******************************************************9999999************************.88899*** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + ++L +++gEalaVn++++lh+++desvs+e++rd++L+lvk+lsPkvv++veqe+++n++ F+ rf+e+l+yy a+f+s++++lpr+++eri+
  MELO3C025987P1 362 QQKNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQHKERIN 456
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+++l+re+vn++acegaer+erhe l+kWr r+++aGF+p+pls+ +++++k+ll +++++ yr+ee++g+l+lgW++r Lv+ +aW+
  MELO3C025987P1 457 IEQHCLAREVVNILACEGAERVERHELLGKWRLRFDMAGFTPYPLSSLVNATIKTLLDNYSNR-YRLEEREGALYLGWMNRDLVASCAWK 545
                     *************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.771149526IPR005202Transcription factor GRAS
PfamPF035143.5E-135176545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQASQLHRGS HMAKRLCYQP LQEVDACYFS QFQSLGRQLY SNVGNQRAHF NFQDISDQYC  60
TLESSSGSHG YAAHNSTSTI TFSPNASPVS QQDSRSNPSD QHNSPDNTYG SSVSGSSITD  120
DISDFRHKLL ELETVMLGPD SDVIYSFDSI YQEGTDNPEM GTWGQVMDAI TKGNLKKILI  180
ACAKAVSDND ALMAQWLMDE LRKMVSVCGE PMQRLGAYML EGLVARLASS GSCIYKSLRC  240
KEPARAELLS YMHLLYEVCP YFKFGYMSAN GAIAEAMKDE DRVHIIDFQI SQGTQWVTLI  300
QAFAGRPGGP PRIRITGIDD PASAYARGGG LDIVGKRLSK LAKLFNVPFE FHSAAISGCD  360
VQQKNLGIRR GEALAVNFAF MLHHMPDESV STENHRDRLL RLVKGLSPKV VTLVEQESNT  420
NTAAFFPRFI ETLDYYNAMF ESIDVTLPRQ HKERINIEQH CLAREVVNIL ACEGAERVER  480
HELLGKWRLR FDMAGFTPYP LSSLVNATIK TLLDNYSNRY RLEEREGALY LGWMNRDLVA  540
SCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-631795458375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819170.0LN681917.1 Cucumis melo genomic scaffold, anchoredscaffold00085.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464182.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_008464183.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_008464184.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_008464185.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1S3CLC70.0A0A1S3CLC7_CUCME; scarecrow-like transcription factor PAT1
STRINGXP_008464182.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]