PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C025940P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | CO-like | ||||||||
Protein Properties | Length: 416aa MW: 45648.8 Da PI: 5.2036 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.4 | 2.3e-06 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ +++++ +C+++ +lC +C + H+ Ht++ MELO3C025940P1 4 MCDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP | |||||||
2 | zf-B_box | 17.5 | 8.8e-06 | 47 | 90 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg........Htvvp 41 C++++ ++ + C + ++ lC++C ++H g H++++ MELO3C025940P1 47 LCERCHLQPSTVRCIEERVSLCQNCDWTGH-GtstlasssHKRQT 90 7*****************************.55888888888766 PP | |||||||
3 | CCT | 60 | 8e-21 | 358 | 401 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk+ MELO3C025940P1 358 RNSAVQRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAG 401 999**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.627 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.36E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.7E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.0044 | 47 | 91 | No hit | No description |
Pfam | PF06203 | 3.9E-16 | 358 | 400 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.17 | 358 | 400 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MGFMCDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHTRTLLCER CHLQPSTVRC 60 IEERVSLCQN CDWTGHGTST LASSSHKRQT INCYSGCPSA AELSCIWSFV LDVPSVNDAC 120 EKELGLMSIA ETDLTGAWSL SENNAGQRMP RSTEASDVCS REKSNVLVGS SSLFGSRPHT 180 SDQSVELDNV ALPKFCCPGT KVAEFCGEDA DLYKEFDMDE MDLNLENYED LFSMSLNHSE 240 EFFENGGIDR FFEAKGLSFE DSVSHSAVAA EGSSVGVVQQ MQPAYSNGAS ADSVMSTKTE 300 PILCFNSRQA QSGMSFSGLT GESSAGDHQD CGASSMFLMG EPPWCAPSTE SSFPSTDRNS 360 AVQRYKEKKK TRKFEKTVRY ATRKARADVR RRVKGRFVKA GEAYDYDPLN QARSC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681917 | 0.0 | LN681917.1 Cucumis melo genomic scaffold, anchoredscaffold00085. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008464151.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X2 | ||||
Swissprot | Q9SSE5 | 1e-143 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A1S3CLA3 | 0.0 | A0A1S3CLA3_CUCME; zinc finger protein CONSTANS-LIKE 9-like isoform X2 | ||||
STRING | XP_008464148.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-121 | CONSTANS-like 9 |